Factsheet for VIT_03s0063g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0031g00110.t01	Wine grape	golgi	75.0	53.23
HORVU0Hr1G015370.1	Barley	cytosol, extracellular	51.82	47.7
GSMUA_Achr9P25260_001	Banana	golgi	57.27	38.41
Zm00001d014532_P001	Maize	plasma membrane	55.91	38.32
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	56.36	38.04
GSMUA_Achr8P03360_001	Banana	golgi	55.91	37.5
HORVU2Hr1G113560.1	Barley	golgi, plasma membrane	50.45	36.88
OQU84413	Sorghum	golgi, mitochondrion	53.64	36.88
EER88850	Sorghum	plastid	55.45	36.75
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	53.18	36.22
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	55.45	35.99
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	46.82	35.76
Os06t0687600-00	Rice	golgi	54.55	35.71
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	55.45	35.67
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	55.0	35.48
TraesCS6D01G121700.1	Wheat	mitochondrion	52.73	35.47
TraesCS6A01G131900.1	Wheat	mitochondrion	52.73	35.37
TraesCS2D01G513800.1	Wheat	golgi, plastid	50.45	35.13
HORVU7Hr1G100750.3	Barley	endoplasmic reticulum	53.64	34.81
TraesCS6B01G160200.1	Wheat	mitochondrion	52.27	34.64
TraesCS2A01G512400.1	Wheat	golgi	49.55	34.49
TraesCS2B01G540300.1	Wheat	golgi	49.55	34.49
Os04t0649900-01	Rice	mitochondrion	49.55	34.28
KXG27192	Sorghum	golgi, mitochondrion, plastid	50.45	33.95
Zm00001d002066_P001	Maize	plasma membrane	49.55	32.54
VIT_12s0035g01340.t01	Wine grape	golgi	40.0	30.99
VIT_14s0068g01970.t01	Wine grape	endoplasmic reticulum, plasma membrane	39.09	30.5
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	39.09	29.66
Os02t0158500-00	Rice	plastid	52.27	29.34
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	39.09	28.67
VIT_01s0010g03680.t01	Wine grape	endoplasmic reticulum, golgi	36.36	28.47
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	26.82	24.38

Protein Annotations

EntrezGene:100267469	wikigene:100267469	MapMan:35.1	EMBL:AM468844	ProteinID:CAN74915	ProteinID:CAN74915.1
ProteinID:CCB56842	ProteinID:CCB56842.1	UniProt:F6HQ85	EMBL:FN596006	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	EntrezGene:LOC100267469	wikigene:LOC100267469	PFAM:PF04669	PANTHER:PTHR31444
PANTHER:PTHR31444:SF0	InterPro:Polysacc_synth_dom	TIGR:TC59355	TIGRFAMs:TIGR01627	UniParc:UPI00021082B5	ArrayExpress:VIT_03s0063g00030
EnsemblPlantsGene:VIT_03s0063g00030	EnsemblPlants:VIT_03s0063g00030.t01	unigene:Vvi.15993	RefSeq:XP_002285113	RefSeq:XP_002285113.1	SEG:seg

Description

No Description!

Coordinates

chr3:-:3575282..3576443

Molecular Weight (calculated)

24740.5 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.270

Length

220 amino acids

Sequence
(BLAST)

001: MTAAEMASIA GVLRRCSSPC NFLIFGLTHE TLLWKALNSN GRTIFLDESE FYIAKFEEKH PDIEAYDVQY TTKVSEMSEL IRSAKEQLRN ECRPVQNLLF
101: SDCKLGINDL PNHLYQVDWD VILVDGPRGY FPAAPGRMSA IFTAGVLARS KKGGSAKTHV FVHDMNRDVE RICSNEFLCK ENLVETTDLL GHFVVETMKP
201: NSFRFCRNPT KSSSPSSSSS

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.