Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G088900.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | HORVU7Hr1G088900.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 90.27 | 89.47 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 88.2 | 88.2 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 88.2 | 87.68 |
| Zm00001d014532_P001 | Maize | plasma membrane | 69.62 | 73.52 |
| EER88850 | Sorghum | plastid | 71.68 | 73.19 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 49.85 | 70.71 |
| Os06t0687600-00 | Rice | golgi | 67.26 | 67.86 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 51.03 | 57.48 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 53.1 | 54.88 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 52.21 | 54.29 |
| VIT_03s0063g00030.t01 | Wine grape | plastid | 34.81 | 53.64 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 51.33 | 53.05 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 42.18 | 49.65 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 40.71 | 44.52 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 39.53 | 44.37 |
| KRH50341 | Soybean | golgi, plastid | 39.53 | 43.09 |
| Solyc01g107800.2.1 | Tomato | endoplasmic reticulum, golgi, mitochondrion, plastid | 39.53 | 42.68 |
| CDX81329 | Canola | plastid | 38.64 | 42.53 |
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 39.23 | 42.36 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 39.53 | 42.27 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 38.94 | 41.9 |
| Bra012143.1-P | Field mustard | plastid | 38.94 | 41.9 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 39.53 | 41.61 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 38.64 | 41.59 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 39.53 | 41.36 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 39.53 | 41.36 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 39.53 | 41.36 |
| KRH28432 | Soybean | mitochondrion | 37.46 | 41.23 |
| PGSC0003DMT400064322 | Potato | plastid | 37.46 | 41.23 |
| KRH77040 | Soybean | mitochondrion | 36.87 | 41.12 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 37.17 | 40.91 |
| KRH70689 | Soybean | plastid | 38.64 | 40.56 |
| KRH57814 | Soybean | mitochondrion | 37.17 | 39.87 |
| KRH04549 | Soybean | plastid | 36.28 | 39.05 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 33.63 | 38.0 |
| Bra039840.1-P | Field mustard | plastid | 35.99 | 37.54 |
| CDY62313 | Canola | plastid | 35.1 | 37.19 |
| AT2G15440.1 | Thale cress | plastid | 35.99 | 37.08 |
| Bra013107.1-P | Field mustard | plastid | 35.4 | 36.59 |
| CDY13145 | Canola | plastid | 35.4 | 36.59 |
| CDX89660 | Canola | plastid | 35.69 | 36.56 |
| CDY37228 | Canola | plastid | 34.81 | 36.53 |
| HORVU3Hr1G108120.1 | Barley | extracellular, plasma membrane, vacuole | 28.61 | 33.22 |
| HORVU7Hr1G120340.1 | Barley | plastid | 33.92 | 32.21 |
| HORVU4Hr1G015310.3 | Barley | endoplasmic reticulum, plastid | 33.63 | 32.2 |
| HORVU2Hr1G089430.1 | Barley | endoplasmic reticulum, peroxisome, plastid | 27.73 | 27.65 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G100750.3 | EnsemblPlantsGene:HORVU7Hr1G100750 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM |
| InterPro:Polysacc_synth_dom | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF19 | PFAM:PF04669 | SEG:seg | TIGRFAMs:TIGR01627 |
| TMHMM:TMhelix | UniParc:UPI000B4854DE | UniProt:A0A287XKX0 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr7H:-:606073359..606074745
Molecular Weight (calculated)
35169.6 Da
IEP (calculated)
8.394
GRAVY (calculated)
-0.009
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: EGAGRAEGSA GALFVEQAVR RXXXMGRRRL WLVVFLACFA CVSLASLLSA ARDASSAVGG RRRATGSTAA AARLAASAGA RRAAAAAAKG EAAATGPGLP
101: GYVFDALVQY AAVGGNTSGS MPAADVRAIA AALKRRSPCN LLVFGLGXXX PLWRALNHGG RTVFLDENQW YVSHLEGRHP GLEAYDVAYT TTVREFPDLL
201: EAARAARAAE CQPVQNLLFS DCRLAINDLP NQLYDVAWDV ILVDGPRGYT ASSPGRMSAI FTAGVLARAR EEEGAATDVL VHDYEREVER ACSREFLCEE
301: NRVPASSTRS LAHFVIRGGS AVRRDAFCGR PAATDTAAQ
101: GYVFDALVQY AAVGGNTSGS MPAADVRAIA AALKRRSPCN LLVFGLGXXX PLWRALNHGG RTVFLDENQW YVSHLEGRHP GLEAYDVAYT TTVREFPDLL
201: EAARAARAAE CQPVQNLLFS DCRLAINDLP NQLYDVAWDV ILVDGPRGYT ASSPGRMSAI FTAGVLARAR EEEGAATDVL VHDYEREVER ACSREFLCEE
301: NRVPASSTRS LAHFVIRGGS AVRRDAFCGR PAATDTAAQ
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.