Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- golgi 3
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_10s0003g01830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0063g00030.t01 | Wine grape | plastid | 53.23 | 75.0 |
| KRH77040 | Soybean | mitochondrion | 71.94 | 73.36 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 72.26 | 72.73 |
| PGSC0003DMT400064322 | Potato | plastid | 71.94 | 72.4 |
| KRH28432 | Soybean | mitochondrion | 71.94 | 72.4 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 69.35 | 71.19 |
| KRH04549 | Soybean | plastid | 70.32 | 69.21 |
| KRH57814 | Soybean | mitochondrion | 69.35 | 68.04 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 66.77 | 65.3 |
| CDX81329 | Canola | plastid | 64.84 | 65.26 |
| Bra012143.1-P | Field mustard | plastid | 66.13 | 65.08 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 66.13 | 65.08 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 65.81 | 64.76 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 65.48 | 63.04 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 65.81 | 62.96 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 65.81 | 62.96 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 65.81 | 62.96 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 52.58 | 49.7 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 37.42 | 48.54 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 44.84 | 48.26 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 50.32 | 47.56 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 49.03 | 46.63 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 44.52 | 45.85 |
| Zm00001d014532_P001 | Maize | plasma membrane | 47.1 | 45.48 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 46.13 | 45.25 |
| TraesCS2B01G540300.1 | Wheat | golgi | 45.81 | 44.94 |
| OQU84413 | Sorghum | golgi, mitochondrion | 45.81 | 44.38 |
| TraesCS2A01G512400.1 | Wheat | golgi | 45.16 | 44.3 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 46.13 | 44.27 |
| EER88850 | Sorghum | plastid | 47.1 | 43.98 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 47.42 | 43.36 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 45.81 | 43.29 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 47.42 | 43.11 |
| Os04t0649900-01 | Rice | mitochondrion | 44.19 | 43.08 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 47.42 | 42.98 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 45.16 | 42.81 |
| Os06t0687600-00 | Rice | golgi | 46.13 | 42.56 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 44.52 | 42.2 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 45.16 | 42.17 |
| Zm00001d002066_P001 | Maize | plasma membrane | 44.19 | 40.9 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 44.52 | 40.71 |
| Os02t0158500-00 | Rice | plastid | 44.52 | 35.2 |
| VIT_14s0068g01970.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 31.61 | 34.75 |
| VIT_12s0035g01340.t01 | Wine grape | golgi | 31.29 | 34.15 |
| VIT_01s0010g03680.t01 | Wine grape | endoplasmic reticulum, golgi | 30.32 | 33.45 |
| VIT_12s0035g01170.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 30.32 | 32.41 |
| VIT_00s0238g00020.t01 | Wine grape | extracellular, plasma membrane | 29.68 | 30.67 |
| VIT_00s0238g00030.t01 | Wine grape | extracellular, plasma membrane | 22.26 | 28.51 |
Protein Annotations
| EntrezGene:100259508 | wikigene:100259508 | MapMan:35.1 | ProteinID:CCB47044 | ProteinID:CCB47044.1 | UniProt:F6H4H2 |
| EMBL:FN595233 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM | EntrezGene:LOC100259508 |
| wikigene:LOC100259508 | PFAM:PF04669 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | TIGR:TC57015 |
| TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0001983B40 | ArrayExpress:VIT_07s0031g00110 | EnsemblPlantsGene:VIT_07s0031g00110 | EnsemblPlants:VIT_07s0031g00110.t01 |
| unigene:Vvi.14911 | RefSeq:XP_002283187 | RefSeq:XP_002283187.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:-:16337941..16339123
Molecular Weight (calculated)
34901.6 Da
IEP (calculated)
7.555
GRAVY (calculated)
-0.225
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNGNGNTKL ILLHPYIQKQ GSSNRLWLLA FISFFTLAFL LTLIYTRDSI PTTVAAAASA APKSANPLLA KPVVDALVHY ASNYNTSGHM SNAELKMISD
101: VLRKCSPPCN FLVFGLTLET LLWKALNHNG RTVFIDENRY YAAYVEEKHP GIEAYDVQYT TKISEMNDLI AYVKETIRNE CRPVQNLLFS DCKLGLNDLP
201: NHAYELDWDV ILIDGPREYW PEAPGRMSPI FTAGVLARSK KGGSPKTHVF VHDFNRKVER VSSKEFLCKE NLVESQDWLG HFVVERMEEN VFQFCRNSTS
301: SSSSSSSSSS
101: VLRKCSPPCN FLVFGLTLET LLWKALNHNG RTVFIDENRY YAAYVEEKHP GIEAYDVQYT TKISEMNDLI AYVKETIRNE CRPVQNLLFS DCKLGLNDLP
201: NHAYELDWDV ILIDGPREYW PEAPGRMSPI FTAGVLARSK KGGSPKTHVF VHDFNRKVER VSSKEFLCKE NLVESQDWLG HFVVERMEEN VFQFCRNSTS
301: SSSSSSSSSS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.