Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- plasma membrane 2
- extracellular 1
- golgi 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | CDX78905 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | CDX98596 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | CDX99411 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | CDY01565 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 91.23 | 89.21 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 91.56 | 88.96 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 90.91 | 88.89 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 83.44 | 79.32 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 83.12 | 79.01 |
| KRH77040 | Soybean | mitochondrion | 65.91 | 66.78 |
| KRH28432 | Soybean | mitochondrion | 65.26 | 65.26 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 65.26 | 64.84 |
| KRH04549 | Soybean | plastid | 65.26 | 63.81 |
| KRH57814 | Soybean | mitochondrion | 65.26 | 63.61 |
| PGSC0003DMT400064322 | Potato | plastid | 62.66 | 62.66 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 62.01 | 62.01 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 60.39 | 61.59 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 37.66 | 48.54 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 48.7 | 45.73 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 42.53 | 45.49 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 47.73 | 44.82 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 43.51 | 44.52 |
| TraesCS2A01G512400.1 | Wheat | golgi | 45.45 | 44.3 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 46.75 | 44.17 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 45.13 | 43.99 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 45.78 | 43.65 |
| Zm00001d014532_P001 | Maize | plasma membrane | 45.45 | 43.61 |
| OQU84413 | Sorghum | golgi, mitochondrion | 45.13 | 43.44 |
| TraesCS2B01G540300.1 | Wheat | golgi | 44.48 | 43.35 |
| CDY62313 | Canola | plastid | 44.48 | 42.81 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 45.45 | 42.68 |
| EER88850 | Sorghum | plastid | 45.78 | 42.47 |
| CDY13145 | Canola | plastid | 45.13 | 42.38 |
| CDY37228 | Canola | plastid | 44.16 | 42.11 |
| CDX89660 | Canola | plastid | 45.13 | 41.99 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 44.48 | 41.9 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 45.45 | 41.3 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 43.83 | 41.28 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 45.78 | 41.23 |
| Os06t0687600-00 | Rice | golgi | 44.81 | 41.07 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 45.45 | 41.06 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 43.51 | 40.36 |
| Zm00001d002066_P001 | Maize | plasma membrane | 43.51 | 40.0 |
| Os04t0649900-01 | Rice | mitochondrion | 41.23 | 39.94 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 42.53 | 38.64 |
| Os02t0158500-00 | Rice | plastid | 42.86 | 33.67 |
| CDX96332 | Canola | endoplasmic reticulum, extracellular | 32.14 | 33.45 |
| CDY20685 | Canola | endoplasmic reticulum, golgi, plasma membrane | 28.57 | 31.32 |
| CDY31075 | Canola | endoplasmic reticulum, golgi, plasma membrane | 28.25 | 30.96 |
| CDY12639 | Canola | endoplasmic reticulum, golgi | 28.9 | 30.9 |
| CDX72815 | Canola | endoplasmic reticulum, extracellular | 30.19 | 30.9 |
| CDY27638 | Canola | endoplasmic reticulum | 28.57 | 30.45 |
| CDX84898 | Canola | endoplasmic reticulum | 28.57 | 30.45 |
| CDY28894 | Canola | endoplasmic reticulum, golgi | 28.57 | 30.24 |
| CDY48797 | Canola | golgi, plasma membrane | 28.9 | 29.97 |
| CDY07428 | Canola | endoplasmic reticulum, golgi | 28.25 | 29.9 |
| CDX93751 | Canola | golgi | 28.57 | 29.73 |
| CDY15292 | Canola | golgi | 28.57 | 29.73 |
| CDY51186 | Canola | endoplasmic reticulum, plasma membrane | 28.25 | 29.49 |
| CDY37946 | Canola | extracellular | 24.35 | 28.3 |
| CDY03407 | Canola | plastid | 28.25 | 27.97 |
| CDY34323 | Canola | plastid | 27.92 | 27.83 |
| CDX92660 | Canola | plastid | 27.27 | 26.92 |
Protein Annotations
| MapMan:35.1 | GO:A0A078CZB8 | EnsemblPlants:CDX81329 | ProteinID:CDX81329 | ProteinID:CDX81329.1 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0045492 | EnsemblPlantsGene:GSBRNA2T00134867001 |
| InterPro:IRX15/IRX15L/IGXM | PFAM:PF04669 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | TIGRFAMs:TIGR01627 |
| TMHMM:TMhelix | UniParc:UPI0004EDAF7F | SEG:seg | : | : | : |
Description
BnaC09g07400D
Coordinates
chrLK031824:-:1030830..1031756
Molecular Weight (calculated)
34735.4 Da
IEP (calculated)
7.281
GRAVY (calculated)
-0.244
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSGGNTNSK LILVHPYIQK QTSSNRLCLL AFVSIFTIAS LLTLLYTTDS IIPSKNVSSV ISSAPISQLP TTAINALLHY ASRSNDSYHM SHGEMKSISD
101: VLRRCPPPCN LLVFGLTHET LLWKSLNHNG RTVYIEENRY YAAYFEEIHP EIEVFDVQYT TKAREARELV SAVKEAARNE CRPVQNLLFS DCKLGLNDLP
201: NHVYDVDWDV ILVDGPRGDG GDVPGRMSSI FTAAVLARSK KSGGNLRTHV FVHDYYRDVE RLCGDEFLCR ENLVESNDML AHYVLERMDK NSTQFCCDRK
301: KRSVSAFS
101: VLRRCPPPCN LLVFGLTHET LLWKSLNHNG RTVYIEENRY YAAYFEEIHP EIEVFDVQYT TKAREARELV SAVKEAARNE CRPVQNLLFS DCKLGLNDLP
201: NHVYDVDWDV ILVDGPRGDG GDVPGRMSSI FTAAVLARSK KSGGNLRTHV FVHDYYRDVE RLCGDEFLCR ENLVESNDML AHYVLERMDK NSTQFCCDRK
301: KRSVSAFS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [golgi,plastid,endoplasmic reticulum,mitochondrion]
SUBAcon: [golgi,plastid,endoplasmic reticulum,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.