Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- plasma membrane 2
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G67210.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT5G67210.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 98.38 | 98.38 |
| PGSC0003DMT400065494 | Potato | golgi, plasma membrane, plastid | 82.47 | 84.11 |
| VIT_07s0031g00110.t01 | Wine grape | golgi | 72.4 | 71.94 |
| KRH77040 | Soybean | mitochondrion | 69.48 | 70.39 |
| KRH28432 | Soybean | mitochondrion | 68.51 | 68.51 |
| KRH57814 | Soybean | mitochondrion | 69.48 | 67.72 |
| KRH04549 | Soybean | plastid | 68.51 | 66.98 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 64.94 | 63.09 |
| Bra012143.1-P | Field mustard | plastid | 64.29 | 62.86 |
| CDY12819 | Canola | golgi, mitochondrion, plasma membrane, plastid | 64.29 | 62.86 |
| CDX81329 | Canola | plastid | 62.66 | 62.66 |
| CDY01429 | Canola | golgi, mitochondrion, plasma membrane, plastid | 63.96 | 62.54 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 62.34 | 59.63 |
| CDY30600 | Canola | endoplasmic reticulum, golgi | 62.34 | 59.26 |
| Bra036059.1-P | Field mustard | endoplasmic reticulum, golgi, plastid | 62.34 | 59.26 |
| CDY17753 | Canola | endoplasmic reticulum, golgi | 62.34 | 59.26 |
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 54.22 | 53.18 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 37.34 | 48.12 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 44.48 | 47.57 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 50.65 | 47.56 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 49.35 | 46.34 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 48.05 | 45.4 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 42.53 | 43.52 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 44.16 | 43.04 |
| Zm00001d014532_P001 | Maize | plasma membrane | 44.48 | 42.68 |
| OQU84413 | Sorghum | golgi, mitochondrion | 44.16 | 42.5 |
| EER88850 | Sorghum | plastid | 45.78 | 42.47 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 44.48 | 42.41 |
| TraesCS2A01G512400.1 | Wheat | golgi | 43.51 | 42.41 |
| TraesCS2B01G540300.1 | Wheat | golgi | 43.51 | 42.41 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 45.13 | 42.38 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 44.81 | 42.2 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 44.48 | 41.9 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 44.16 | 40.96 |
| Os04t0649900-01 | Rice | mitochondrion | 42.21 | 40.88 |
| Os06t0687600-00 | Rice | golgi | 44.16 | 40.48 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 44.48 | 40.18 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 44.16 | 40.12 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 44.48 | 40.06 |
| Zm00001d002066_P001 | Maize | plasma membrane | 43.51 | 40.0 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 41.23 | 37.46 |
| Os02t0158500-00 | Rice | plastid | 43.51 | 34.18 |
| PGSC0003DMT400064018 | Potato | plasma membrane | 29.22 | 32.61 |
| PGSC0003DMT400084744 | Potato | endoplasmic reticulum | 29.55 | 32.27 |
| PGSC0003DMT400080082 | Potato | endoplasmic reticulum, golgi | 32.14 | 32.14 |
| PGSC0003DMT400077009 | Potato | extracellular | 27.6 | 30.91 |
| PGSC0003DMT400039556 | Potato | golgi | 23.38 | 26.77 |
Protein Annotations
| EntrezGene:102581006 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM |
| UniProt:M1CC57 | PFAM:PF04669 | EnsemblPlantsGene:PGSC0003DMG400024989 | PGSC:PGSC0003DMG400024989 | EnsemblPlants:PGSC0003DMT400064322 | PANTHER:PTHR31444 |
| PANTHER:PTHR31444:SF8 | InterPro:Polysacc_synth_dom | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI000295CCA7 | RefSeq:XP_006339865.1 |
| SEG:seg | : | : | : | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400024989]
Coordinates
chr2:-:43438486..43439667
Molecular Weight (calculated)
34920.7 Da
IEP (calculated)
7.602
GRAVY (calculated)
-0.240
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNTIGSSTK LILLHPYIQK QGSSNRFWAL AFVSFLTLAF LLTLIYTRES KITTSIAVAS TITSTSTPPL SKAVARALVH YASNSNNTEH MSYTDIKHIA
101: DVLQKCSQPC NLLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYIEEKY PEIEAYDVQY TTKLSEMKEL IAGVKEQVRN ECKPVQNLLF SECKLGLNDL
201: PNQFYEVDWD VILVDGPRGY WPEAPGRMSA IFTASVLARS KKGGNPKTHI FVHDFHQQVD RITSDEFLCK ENLVKSMDML GHFVLERMDA NSFQFCRNHN
301: STTANSSS
101: DVLQKCSQPC NLLVFGLTHE TLLWKALNHN GRTVFIDENR YYAAYIEEKY PEIEAYDVQY TTKLSEMKEL IAGVKEQVRN ECKPVQNLLF SECKLGLNDL
201: PNQFYEVDWD VILVDGPRGY WPEAPGRMSA IFTASVLARS KKGGNPKTHI FVHDFHQQVD RITSDEFLCK ENLVKSMDML GHFVLERMDA NSFQFCRNHN
301: STTANSSS
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.