CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014532_P001	Maize	plasma membrane	90.36	93.46
Os06t0687600-00	Rice	golgi	80.42	79.46
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	78.01	76.4
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	78.31	76.02
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	78.01	75.95
HORVU7Hr1G100750.3	Barley	endoplasmic reticulum	73.19	71.68
OQU84413	Sorghum	golgi, mitochondrion	65.06	67.5
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	57.53	58.59
GSMUA_Achr9P25260_001	Banana	golgi	57.83	58.54
GSMUA_Achr8P03360_001	Banana	golgi	56.93	57.62
VIT_03s0063g00030.t01	Wine grape	plastid	36.75	55.45
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	46.39	53.47
KXG27192	Sorghum	golgi, mitochondrion, plastid	52.41	53.21
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	45.78	48.41
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	45.18	47.77
VIT_07s0031g00110.t01	Wine grape	golgi	43.98	47.1
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	42.77	47.02
CDX81329	Canola	plastid	42.47	45.78
PGSC0003DMT400064322	Potato	plastid	42.47	45.78
KRH50341	Soybean	golgi, plastid	42.77	45.66
Solyc02g093090.1.1	Tomato	extracellular, nucleus	41.87	45.13
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	43.37	44.72
KRH28432	Soybean	mitochondrion	41.27	44.48
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	43.37	44.44
CDY17753	Canola	endoplasmic reticulum, golgi	43.37	44.44
CDY30600	Canola	endoplasmic reticulum, golgi	43.37	44.44
KRH77040	Soybean	mitochondrion	40.66	44.41
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	42.17	44.16
Bra012143.1-P	Field mustard	plastid	41.87	44.13
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	41.87	44.13
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	41.57	43.81
KRH70689	Soybean	plastid	42.47	43.65
KRH57814	Soybean	mitochondrion	40.96	43.04
KRH04549	Soybean	plastid	40.36	42.54
CDY13145	Canola	plastid	39.16	39.63
Bra013107.1-P	Field mustard	plastid	39.16	39.63
Bra039840.1-P	Field mustard	plastid	38.55	39.38
CDY62313	Canola	plastid	37.95	39.38
CDX89660	Canola	plastid	39.16	39.27
AT2G15440.1	Thale cress	plastid	38.55	38.91
CDY37228	Canola	plastid	37.35	38.39
EES16857	Sorghum	mitochondrion	34.34	37.62
EES08266	Sorghum	mitochondrion	31.93	32.32
OQU82596	Sorghum	plastid	26.81	30.07

Protein Annotations

EnsemblPlants:EER88850	EnsemblPlantsGene:SORBI_3010G238100	EntrezGene:8063777	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444
PANTHER:PTHR31444:SF19	PFAM:PF04669	ProteinID:EER88850	ProteinID:EER88850.1	RefSeq:XP_002437483.1	SEG:seg
TIGRFAMs:TIGR01627	UniParc:UPI0001A890D2	UniProt:C5Z8C3	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr10:+:58028803..58031101

Molecular Weight (calculated)

34452.9 Da

IEP (calculated)

8.157

GRAVY (calculated)

0.056

Length

332 amino acids

Sequence
(BLAST)

001: MKGLSGPKLL VVHPSSNKSP GGAGSPGAVL GARRRVCAAV FLACFACVSL ATTLLSAARD PGGAAAGRAA AAFAVPARVG AGTAAVAATG EGLPGHVFDA
101: LVQYASAGGN STASMPGADV RAIAAVLKRR APCNLLVFGL GGETPLWRAL NHGGRTVFLD ENQYYVSHLE GRHPGLEAYD VAYTTTVREF PDLLDAARAA
201: RAAECRPVQN LLFSDCRLAI NDLPNQLYDV SWDVILVDGP RGYTATSPGR MSAIFTAGVL ARTRAGEGAT TDVLVHDYER EVERACSREF LCEENRVAET
301: STRSLAHFVV RGGGSARRDA FCSGPGTAAA AH

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.