Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, golgi, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400066571 | Potato | endoplasmic reticulum, golgi, mitochondrion, plastid | 95.22 | 95.22 |
| Solyc02g093090.1.1 | Tomato | extracellular, nucleus | 52.55 | 53.57 |
| KRH50341 | Soybean | golgi, plastid | 50.64 | 51.13 |
| HORVU0Hr1G015370.1 | Barley | cytosol, extracellular | 38.22 | 50.21 |
| KRH70689 | Soybean | plastid | 51.59 | 50.15 |
| GSMUA_Achr6P29610_001 | Banana | endoplasmic reticulum, golgi, plastid | 49.04 | 47.24 |
| Zm00001d014532_P001 | Maize | plasma membrane | 48.09 | 47.04 |
| GSMUA_Achr9P25260_001 | Banana | golgi | 49.04 | 46.95 |
| OQU84413 | Sorghum | golgi, mitochondrion | 47.77 | 46.88 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 42.36 | 46.18 |
| Bra013107.1-P | Field mustard | plastid | 48.09 | 46.04 |
| GSMUA_Achr8P03360_001 | Banana | golgi | 48.09 | 46.04 |
| Zm00001d015307_P001 | Maize | golgi, mitochondrion, plastid | 47.13 | 45.82 |
| CDY13145 | Canola | plastid | 47.77 | 45.73 |
| CDX89660 | Canola | plastid | 47.77 | 45.32 |
| AT2G15440.1 | Thale cress | plastid | 47.45 | 45.29 |
| EER88850 | Sorghum | plastid | 47.77 | 45.18 |
| Os06t0687600-00 | Rice | golgi | 47.13 | 44.05 |
| Bra039840.1-P | Field mustard | plastid | 45.54 | 44.0 |
| CDY37228 | Canola | plastid | 44.9 | 43.65 |
| CDY62313 | Canola | plastid | 44.27 | 43.44 |
| HORVU2Hr1G113560.1 | Barley | golgi, plasma membrane | 40.76 | 42.52 |
| TraesCS7A01G443100.1 | Wheat | golgi, mitochondrion | 46.18 | 42.52 |
| TraesCS6D01G121700.1 | Wheat | mitochondrion | 43.95 | 42.2 |
| TraesCS7D01G432300.1 | Wheat | golgi, mitochondrion | 45.54 | 42.18 |
| TraesCS7B01G341900.1 | Wheat | golgi, mitochondrion | 45.86 | 42.11 |
| TraesCS2D01G513800.1 | Wheat | golgi, plastid | 42.36 | 42.09 |
| TraesCS6A01G131900.1 | Wheat | mitochondrion | 43.95 | 42.07 |
| TraesCS6B01G160200.1 | Wheat | mitochondrion | 44.27 | 41.87 |
| Solyc11g020540.1.1 | Tomato | cytosol | 8.92 | 41.79 |
| TraesCS2B01G540300.1 | Wheat | golgi | 41.72 | 41.46 |
| KXG27192 | Sorghum | golgi, mitochondrion, plastid | 42.99 | 41.28 |
| Os04t0649900-01 | Rice | mitochondrion | 41.72 | 41.2 |
| TraesCS2A01G512400.1 | Wheat | golgi | 41.4 | 41.14 |
| HORVU7Hr1G100750.3 | Barley | endoplasmic reticulum | 42.68 | 39.53 |
| Zm00001d002066_P001 | Maize | plasma membrane | 41.72 | 39.1 |
| Os02t0158500-00 | Rice | plastid | 44.27 | 35.46 |
| Solyc01g103360.2.1 | Tomato | plasma membrane | 29.62 | 33.82 |
| Solyc11g020470.1.1 | Tomato | cytosol | 14.97 | 31.13 |
| Solyc06g064800.1.1 | Tomato | extracellular, golgi | 25.8 | 30.68 |
| Solyc11g031950.1.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 27.71 | 29.59 |
| Solyc07g015920.1.1 | Tomato | extracellular | 25.16 | 28.73 |
| Solyc03g110890.1.1 | Tomato | plasma membrane, vacuole | 24.2 | 25.25 |
Protein Annotations
| EnsemblPlants:Solyc01g107800.2.1 | EnsemblPlantsGene:Solyc01g107800.2 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045492 | InterPro:IRX15/IRX15L/IGXM |
| InterPro:Polysacc_synth_dom | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF0 | PFAM:PF04669 | SEG:seg | TIGRFAMs:TIGR01627 |
| TMHMM:TMhelix | UniParc:UPI0002767E74 | UniProt:K4B2Z6 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1:-:95217746..95219225
Molecular Weight (calculated)
34768.4 Da
IEP (calculated)
7.085
GRAVY (calculated)
-0.038
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MKANNAKVIV FHPSLHKQGS GTITASPRIW FLVFLSFFTF AFALTFFTAK DAIPTSKTGT DTAAGSSPLP AAVFNTLLYY ASLNSSTVSS RMSAVELKSI
101: ATVLRRCKAP CNFLVFGLTH ETLLWHSLNH KGRTVFVDES AYLVSKLEEK HPEIEAYDVQ FTTKVSELHD LLDYTKEQLK GECRPVQNLL FSDCKLGIND
201: LPNHIYDVPW DVILIDGPRG FSSAAPGRMS AIYTAGVFAR SKRGNSGKTH VFVHEIDRNV EKICSEEFLC SENLVETKEL LGHFVVEKME ANRFEFCSVF
301: DPSSSPSASS SSSV
101: ATVLRRCKAP CNFLVFGLTH ETLLWHSLNH KGRTVFVDES AYLVSKLEEK HPEIEAYDVQ FTTKVSELHD LLDYTKEQLK GECRPVQNLL FSDCKLGIND
201: LPNHIYDVPW DVILIDGPRG FSSAAPGRMS AIYTAGVFAR SKRGNSGKTH VFVHEIDRNV EKICSEEFLC SENLVETKEL LGHFVVEKME ANRFEFCSVF
301: DPSSSPSASS SSSV
001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA
Arabidopsis Description
IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.