Factsheet for GSMUA_Achr9P25260_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P10230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67210.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03360_001	Banana	golgi	76.83	76.83
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	66.77	76.04
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	74.39	74.85
HORVU0Hr1G015370.1	Barley	cytosol, extracellular	47.87	65.69
Zm00001d014532_P001	Maize	plasma membrane	57.93	59.19
TraesCS6A01G131900.1	Wheat	mitochondrion	58.54	58.54
TraesCS6D01G121700.1	Wheat	mitochondrion	58.23	58.41
OQU84413	Sorghum	golgi, mitochondrion	56.71	58.12
EER88850	Sorghum	plastid	58.54	57.83
VIT_03s0063g00030.t01	Wine grape	plastid	38.41	57.27
TraesCS6B01G160200.1	Wheat	mitochondrion	57.93	57.23
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	55.79	56.66
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	58.84	56.6
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	57.93	56.05
TraesCS7B01G341900.1	Wheat	golgi, mitochondrion	58.23	55.85
HORVU2Hr1G113560.1	Barley	golgi, plasma membrane	51.22	55.81
TraesCS2D01G513800.1	Wheat	golgi, plastid	52.44	54.43
Os06t0687600-00	Rice	golgi	55.49	54.17
TraesCS2B01G540300.1	Wheat	golgi	52.13	54.11
TraesCS2A01G512400.1	Wheat	golgi	51.83	53.8
HORVU7Hr1G100750.3	Barley	endoplasmic reticulum	54.88	53.1
VIT_07s0031g00110.t01	Wine grape	golgi	49.7	52.58
KRH50341	Soybean	golgi, plastid	49.09	51.77
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	47.56	51.66
Os04t0649900-01	Rice	mitochondrion	49.39	50.94
KXG27192	Sorghum	golgi, mitochondrion, plastid	50.61	50.76
PGSC0003DMT400064322	Potato	plastid	47.56	50.65
Zm00001d002066_P001	Maize	plasma membrane	51.52	50.45
KRH77040	Soybean	mitochondrion	46.65	50.33
Solyc02g093090.1.1	Tomato	extracellular, nucleus	46.95	50.0
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	47.56	49.68
KRH70689	Soybean	plastid	48.78	49.54
KRH28432	Soybean	mitochondrion	46.34	49.35
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	46.95	49.04
CDX81329	Canola	plastid	45.73	48.7
Os02t0158500-00	Rice	plastid	57.93	48.47
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	46.65	48.27
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	46.34	48.25
Bra012143.1-P	Field mustard	plastid	46.04	47.94
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	47.26	47.84
CDY30600	Canola	endoplasmic reticulum, golgi	47.26	47.84
CDY17753	Canola	endoplasmic reticulum, golgi	47.26	47.84
KRH57814	Soybean	mitochondrion	46.04	47.78
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	45.73	47.62
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	46.65	47.52
KRH04549	Soybean	plastid	45.43	47.3
Bra013107.1-P	Field mustard	plastid	43.9	43.9
CDY13145	Canola	plastid	43.6	43.6
CDX89660	Canola	plastid	43.29	42.9
CDY62313	Canola	plastid	41.77	42.81
CDY37228	Canola	plastid	41.77	42.41
Bra039840.1-P	Field mustard	plastid	41.46	41.85
AT2G15440.1	Thale cress	plastid	41.46	41.34
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	31.71	37.28
GSMUA_Achr9P01440_001	Banana	golgi	28.66	35.88
GSMUA_Achr3P19550_001	Banana	mitochondrion	29.88	34.15
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi	26.52	33.85
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	25.91	33.73
GSMUA_Achr9P01430_001	Banana	extracellular	29.27	33.33

Protein Annotations

MapMan:35.1	GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0045492	EnsemblPlantsGene:GSMUA_Achr9G25260_001	EnsemblPlants:GSMUA_Achr9P25260_001
EnsemblPlants:GSMUA_Achr9T25260_001	InterPro:IRX15/IRX15L/IGXM	UniProt:M0U3D3	PFAM:PF04669	PANTHER:PTHR31444	PANTHER:PTHR31444:SF19
InterPro:Polysacc_synth_dom	TIGRFAMs:TIGR01627	TMHMM:TMhelix	UniParc:UPI000296544C	SEG:seg	:

Description

plant-specific domain TIGR01627 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G25260_001]

Coordinates

chr9:+:29832239..29833225

Molecular Weight (calculated)

35502.2 Da

IEP (calculated)

8.164

GRAVY (calculated)

-0.131

Length

328 amino acids

Sequence
(BLAST)

001: MKGVNSTRLI LLQPSSNHKQ GGNGVNTSIS ISVFHHHRIW LIALLSFFTF ASLLTLLSTT TARDPSDLPS ASSSSTAAVA SAGSASYGKP SPLPAPVFDA
101: LVNYAVSSNS TGKMREEDLR AVAGVLRRRA PCNLLVFGIG HETPLWRALN HGGRTVFLDE NEYYVARVEG RNPGLEAYDV AYTTKVREMP DLLAAARRQR
201: RGECRPVQNL LFSDCRLAIN DLPNQLYDVA WDVILVDGPK GHTPATPGRM SAIFTAAVMA RSRGRGHTDV LVHDHDREAE RVCSAEFLCP ENLVAATPHL
301: AHFLIRAGPA DEFCSNRTST AGDAIATS

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [golgi,plastid,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.