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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • endoplasmic reticulum 3
  • nucleus 1
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, golgi, plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
WoLF PSORT:plastid
YLoc:golgi
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY30600 Canola endoplasmic reticulum, golgi 99.69 99.69
CDY17753 Canola endoplasmic reticulum, golgi 99.07 99.07
AT3G50220.1 Thale cress endoplasmic reticulum, golgi 91.67 92.24
Bra012143.1-P Field mustard plastid 79.94 82.22
KRH77040 Soybean mitochondrion 64.2 68.42
KRH28432 Soybean mitochondrion 64.2 67.53
VIT_07s0031g00110.t01 Wine grape golgi 62.96 65.81
KRH04549 Soybean plastid 62.35 64.13
KRH57814 Soybean mitochondrion 62.04 63.61
PGSC0003DMT400065494 Potato golgi, plasma membrane, plastid 58.33 62.58
PGSC0003DMT400064322 Potato plastid 59.26 62.34
Solyc02g093090.1.1 Tomato extracellular, nucleus 58.02 61.04
HORVU0Hr1G015370.1 Barley cytosol, extracellular 35.8 48.54
GSMUA_Achr9P25260_001 Banana golgi 47.84 47.26
GSMUA_Achr10P... Banana extracellular, plasma membrane, plastid 41.98 47.22
GSMUA_Achr8P03360_001 Banana golgi 47.22 46.65
GSMUA_Achr6P29610_001 Banana endoplasmic reticulum, golgi, plastid 46.3 46.01
Zm00001d014532_P001 Maize plasma membrane 44.44 44.86
Zm00001d015307_P001 Maize golgi, mitochondrion, plastid 44.44 44.58
OQU84413 Sorghum golgi, mitochondrion 43.52 44.06
EER88850 Sorghum plastid 44.44 43.37
TraesCS6A01G131900.1 Wheat mitochondrion 43.52 42.99
Bra013107.1-P Field mustard plastid 43.52 42.99
HORVU2Hr1G113560.1 Barley golgi, plasma membrane 39.81 42.86
TraesCS2D01G513800.1 Wheat golgi, plastid 41.36 42.41
TraesCS2A01G512400.1 Wheat golgi 41.36 42.41
Os06t0687600-00 Rice golgi 43.83 42.26
TraesCS6D01G121700.1 Wheat mitochondrion 42.59 42.2
TraesCS2B01G540300.1 Wheat golgi 41.05 42.09
Bra039840.1-P Field mustard plastid 41.98 41.85
TraesCS7D01G432300.1 Wheat golgi, mitochondrion 43.52 41.59
TraesCS7B01G341900.1 Wheat golgi, mitochondrion 43.83 41.52
TraesCS7A01G443100.1 Wheat golgi, mitochondrion 43.52 41.35
KXG27192 Sorghum golgi, mitochondrion, plastid 41.67 41.28
TraesCS6B01G160200.1 Wheat mitochondrion 41.98 40.96
Zm00001d002066_P001 Maize plasma membrane 42.28 40.9
Os04t0649900-01 Rice mitochondrion 39.2 39.94
HORVU7Hr1G100750.3 Barley endoplasmic reticulum 41.36 39.53
Bra013845.1-P Field mustard cytosol 19.75 35.75
Os02t0158500-00 Rice plastid 41.67 34.44
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 29.94 32.77
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 27.78 32.03
Bra034005.1-P Field mustard endoplasmic reticulum, golgi 27.78 31.25
Bra004093.1-P Field mustard endoplasmic reticulum, golgi 27.78 30.93
Bra032854.1-P Field mustard endoplasmic reticulum 27.47 30.8
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 27.78 30.3
Bra028013.1-P Field mustard golgi 27.47 30.07
Bra030066.1-P Field mustard endoplasmic reticulum, plasma membrane 26.54 29.76
Bra019203.1-P Field mustard plastid 27.16 28.21
Protein Annotations
MapMan:35.1EnsemblPlantsGene:Bra036059EnsemblPlants:Bra036059.1EnsemblPlants:Bra036059.1-PGO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009834GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0045492
InterPro:IRX15/IRX15L/IGXMUniProt:M4F4Q9PFAM:PF04669PANTHER:PTHR31444PANTHER:PTHR31444:SF8InterPro:Polysacc_synth_dom
TIGRFAMs:TIGR01627TMHMM:TMhelixUniParc:UPI0002542B69SEG:seg::
Description
AT3G50220 (E=1e-145) | unknown protein
Coordinates
chrA09:-:25039549..25040523
Molecular Weight (calculated)
36054.8 Da
IEP (calculated)
7.084
GRAVY (calculated)
-0.183
Length
324 amino acids
Sequence
(BLAST)
001: MKNGSGNTNT KLILLHPYIQ KQSSTTRLWL LAFVSFFTII FLLTLLYTRD AIIPSKNTSV AAAVAAVVTS AAGVSPSPTT TTNTNLPTTT INALLHYASR
101: SNDSFHMSYG EMKSISDVLR RCAPPCNLLV FGLTHETLLW KALNHNGRTV FVEENRYYAA YFEEIHPEID VFDVQYTTKA HEAGELVAAA KEAAGNECRP
201: VQNLLFSDCK LGLNDLPNHV YDVDWDVIFV DGPRGDANEG PGRMSSIFTA AVLARSKKGG SPKTHVFVHD YYRDVERLCG DEFLCRENLV ESNELLAHYV
301: LDKMDKNSTR FCSDRKKRSV SSLS
Best Arabidopsis Sequence Match ( AT3G50220.1 )
(BLAST)
001: MKNGSGNTNT KLILLHPYIQ KQTSTTRLWL LAFVSFFTIV FLLTLLYTRD TIPSKNTSVA AAVAAVVTGG STPSASSPIS NSNLPTSAIN ALLHYASRSN
101: DSFHMSYGEM KSISDVLRRC APPCNLLVFG LTHETLLWKS LNHNGRTVFI EENRYYAAYF EEIHPEIDVF DVQYTTKAHE AGELVTAAKE AAGNECRPVQ
201: NLLFSDCKLG LNDLPNHVYD VDWDVIFVDG PRGDAHEGPG RMSSIFTAAV LARSKKGGTP KTHVFVHDYY RDVERLCGDE FLCRENLVES NDLLAHYVLD
301: KMDKNSTKFC NGRKKRSVSS LS
Arabidopsis Description
IRX15Protein IRREGULAR XYLEM 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNE5]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.