Factsheet for TraesCS6A01G131900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	golgi, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G121700.1	Wheat	mitochondrion	96.65	96.94
HORVU0Hr1G015370.1	Barley	cytosol, extracellular	69.21	94.98
TraesCS6B01G160200.1	Wheat	mitochondrion	95.12	93.98
OQU84413	Sorghum	golgi, mitochondrion	74.39	76.25
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	73.78	74.92
Os02t0158500-00	Rice	plastid	79.88	66.84
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	64.63	62.17
GSMUA_Achr9P25260_001	Banana	golgi	58.54	58.54
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	49.09	55.9
GSMUA_Achr6P29610_001	Banana	endoplasmic reticulum, golgi, plastid	55.49	55.83
GSMUA_Achr8P03360_001	Banana	golgi	55.79	55.79
TraesCS2A01G512400.1	Wheat	golgi	51.52	53.48
VIT_03s0063g00030.t01	Wine grape	plastid	35.37	52.73
PGSC0003DMT400065494	Potato	golgi, plasma membrane, plastid	42.38	46.03
VIT_07s0031g00110.t01	Wine grape	golgi	43.29	45.81
KRH50341	Soybean	golgi, plastid	43.29	45.66
PGSC0003DMT400066571	Potato	endoplasmic reticulum, golgi, mitochondrion, plastid	43.6	45.54
CDX81329	Canola	plastid	42.68	45.45
PGSC0003DMT400064322	Potato	plastid	42.38	45.13
AT5G67210.1	Thale cress	endoplasmic reticulum, golgi, mitochondrion, plastid	43.6	45.11
Solyc02g093090.1.1	Tomato	extracellular, nucleus	42.07	44.81
Bra012143.1-P	Field mustard	plastid	42.99	44.76
CDY12819	Canola	golgi, mitochondrion, plasma membrane, plastid	42.68	44.44
KRH77040	Soybean	mitochondrion	41.16	44.41
KRH70689	Soybean	plastid	43.6	44.27
CDY01429	Canola	golgi, mitochondrion, plasma membrane, plastid	42.38	44.13
Solyc01g107800.2.1	Tomato	endoplasmic reticulum, golgi, mitochondrion, plastid	42.07	43.95
AT3G50220.1	Thale cress	endoplasmic reticulum, golgi	42.99	43.79
CDY17753	Canola	endoplasmic reticulum, golgi	42.99	43.52
CDY30600	Canola	endoplasmic reticulum, golgi	42.99	43.52
Bra036059.1-P	Field mustard	endoplasmic reticulum, golgi, plastid	42.99	43.52
KRH28432	Soybean	mitochondrion	40.85	43.51
KRH57814	Soybean	mitochondrion	41.16	42.72
KRH04549	Soybean	plastid	40.55	42.22
Bra039840.1-P	Field mustard	plastid	39.02	39.38
CDY62313	Canola	plastid	37.8	38.75
CDY13145	Canola	plastid	38.72	38.72
Bra013107.1-P	Field mustard	plastid	38.72	38.72
CDY37228	Canola	plastid	37.8	38.39
CDX89660	Canola	plastid	38.72	38.37
AT2G15440.1	Thale cress	plastid	37.2	37.08
TraesCS5A01G313000.1	Wheat	mitochondrion	32.93	36.12
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	33.23	36.09
TraesCS1A01G365400.1	Wheat	golgi	28.66	34.06
TraesCS2A01G381200.1	Wheat	extracellular	29.57	32.88
TraesCS4A01G227100.1	Wheat	mitochondrion	31.71	32.1

Protein Annotations

EnsemblPlants:TraesCS6A01G131900.1	EnsemblPlantsGene:TraesCS6A01G131900	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF19
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:-:104113050..104114036

Molecular Weight (calculated)

34384.9 Da

IEP (calculated)

7.780

GRAVY (calculated)

0.107

Length

328 amino acids

Sequence
(BLAST)

001: MKAMSGTKLL LVRQPSSKYG NGAASPATAA SISWRRFWLV AFLALFTCAS LLTVFSTARA PSGAASPRVT FAAGAGAGSA VGGASAGGGA LPAYVFDALV
101: RYAAAAGANS TVSMPEEDVR AIASVLRRRA PCNLLVFGLG AETPLWRALN HGGRTVFLDE NPFYVAHMEG AHGGLEAYDV AYATAVRELP DLLDAARASR
201: RAECRPVQNL LFSDCRLAIG DLPNQLYDVA WDVILVDGPH GYAEGSPGRM AAIFSAAVMA RTKGTVTDVL VHDYEREVES LCAREFLCDE NRVEGTGTPS
301: LGHYVVRGGA AANREAFCGA PPTAKKAN

Best Arabidopsis Sequence Match ( AT5G67210.1 )
(BLAST)

001: MKSGGNTNTK LILVHPYIQK QTSTNRLWLL AFVSFFTIAF LLTLLYTTDS IISSKNNSAT VSSAVNSAVT TATISQLPTT AINAMLHYAS RSNDSYHMSY
101: GEMKSISDVL RRCSPPCNLL VFGLTHETLL WKSLNHNGRT VFIEENRYYA AYFEEIHPEI EVFDVQYTTK AREARELVSA VKEAARNECR PVQNLLFSDC
201: KLGLNDLPNH VYDVDWDVIL VDGPRGDGGD VPGRMSSIFT AAVLARSKKG GNPKTHVFVH DYYRDVERLC GDEFLCRENL VESNDLLAHY VLEKMDKNST
301: QFCRGRKKKR SVSSPSA

Arabidopsis Description

IRX15-LIRX15-L [Source:UniProtKB/TrEMBL;Acc:A0A178UEM8]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.