Factsheet for TraesCS1A01G365400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G370900.1	Wheat	extracellular, plasma membrane	95.29	97.77
TraesCS1B01G382900.1	Wheat	plasma membrane, vacuole	96.01	96.72
Zm00001d001763_P001	Maize	plasma membrane	76.09	74.73
OQU82596	Sorghum	plastid	77.54	72.3
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, golgi	41.67	44.75
Solyc11g020540.1.1	Tomato	cytosol	10.51	43.28
GSMUA_Achr9P01440_001	Banana	golgi	36.96	38.93
Bra013845.1-P	Field mustard	cytosol	24.64	37.99
KRH57238	Soybean	golgi	34.06	32.19
KRH63768	Soybean	plastid	33.7	31.85
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	34.78	31.79
Solyc11g020470.1.1	Tomato	cytosol	17.39	31.79
CDX92660	Canola	plastid	35.87	31.73
KRH54181	Soybean	plastid	34.06	30.92
AT4G24910.1	Thale cress	plastid	35.14	30.79
TraesCS5A01G313000.1	Wheat	mitochondrion	33.33	30.77
Bra019203.1-P	Field mustard	plastid	34.06	30.13
KRH03967	Soybean	vacuole	35.87	29.91
CDY03407	Canola	plastid	33.7	29.9
PGSC0003DMT400039556	Potato	golgi	28.62	29.37
CDY34323	Canola	plastid	32.61	29.13
TraesCS6A01G131900.1	Wheat	mitochondrion	34.06	28.66
TraesCS2A01G512400.1	Wheat	golgi	32.25	28.16
TraesCS4A01G227100.1	Wheat	mitochondrion	32.97	28.09
TraesCS2A01G381200.1	Wheat	extracellular	29.35	27.46
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	33.33	26.98
Solyc03g110890.1.1	Tomato	plasma membrane, vacuole	27.54	25.25
Os11t0488500-01	Rice	cytosol, nucleus	14.49	12.31

Protein Annotations

EnsemblPlants:TraesCS1A01G365400.1	EnsemblPlantsGene:TraesCS1A01G365400	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF7
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:35.1	:

Description

No Description!

Coordinates

chr1A:+:544495425..544496255

Molecular Weight (calculated)

28452.1 Da

IEP (calculated)

9.918

GRAVY (calculated)

0.101

Length

276 amino acids

Sequence
(BLAST)

001: MMSPKQLLTT ILIVFSTLSF IKLLLLTHSA SSSPARPGRS AWDAGGSGND NGTAARDGLN AKEFALLRSV VAARAPCGLL VFGLSPQLLA LAAVNSGQGA
101: ATAFVTDSAE DAASARRVLA GRGPGPGSAA VHRASYPDPA GEAWALLRRA RASPVCGRPT GTVRKSGCRL ALTSLPREVL DARWDVVVVD GPSGAGPGEP
201: GRMGAIYTAA ALARAAGGGA VDVAVHDMNR TVERWYAREY LCEDNLVAAK GRLWHFRVAA GGPPDAFCST APVQIL

Best Arabidopsis Sequence Match ( AT4G24910.1 )
(BLAST)

001: MPPQFHQSSL SILNPLLRFS PPSSPDNPKH QRLSTIKMPK FTVRKLIPLL IFVLSSLSVL RLLRISYKSS SKSQSSSSTT FRLSPADSSQ QLRANEGPTA
101: LMEKELKLLS DTVTRRSPCN ILVFGFAPQY LMLSSINTRG ITVILEDEPA KIMIPKAEVN PNNTRIYSLK YHQMEVRNAY NLLQHARANP ACAPNMNNQH
201: QGSSDCKLEL RDLPQQVHNT KWDVIVVDGP RGDDLETPGR MGSIYTAAVL ARKGSSNSTT DVFVHDVHRT AEKWLSWEFL CQENLVSAKG TFWKFRIKRQ
301: SNASRFCSPE TVIIR

Arabidopsis Description

Glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Source:UniProtKB/TrEMBL;Acc:Q9SW35]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.