Factsheet for TraesCS5A01G313000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G319700.1	Wheat	mitochondrion	97.99	98.32
TraesCS5B01G313900.1	Wheat	golgi, unclear	97.66	97.33
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	92.31	92.0
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	89.3	88.41
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	77.93	78.98
EES16857	Sorghum	mitochondrion	78.6	77.56
Zm00001d023950_P001	Maize	mitochondrion	77.93	75.4
Zm00001d041782_P001	Maize	plasma membrane	73.91	74.16
Zm00001d028737_P001	Maize	golgi	37.79	66.86
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	53.51	57.35
TraesCS4A01G227100.1	Wheat	mitochondrion	61.54	56.79
VIT_12s0035g01340.t01	Wine grape	golgi	52.84	55.63
KRH50678	Soybean	cytosol	13.04	54.93
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	53.18	54.08
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	55.18	53.57
Solyc01g103360.2.1	Tomato	plasma membrane	49.16	53.45
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	50.17	53.19
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	49.83	53.02
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	49.83	53.02
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	49.5	52.67
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	44.15	52.38
PGSC0003DMT400064018	Potato	plasma membrane	47.83	51.81
CDX96332	Canola	endoplasmic reticulum, extracellular	50.84	51.35
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	50.84	51.35
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	51.51	51.33
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	50.5	51.19
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	47.83	51.07
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	49.5	51.03
AT4G09990.1	Thale cress	golgi	49.16	50.69
CDY48797	Canola	golgi, plasma membrane	50.17	50.51
CDX72815	Canola	endoplasmic reticulum, extracellular	50.84	50.5
Bra028013.1-P	Field mustard	golgi	49.83	50.34
CDX93751	Canola	golgi	49.83	50.34
CDY15292	Canola	golgi	49.83	50.34
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	49.83	50.17
AT1G33800.1	Thale cress	golgi, plasma membrane	49.16	49.49
KRH64803	Soybean	golgi, plasma membrane	49.83	48.69
Solyc06g064800.1.1	Tomato	extracellular, golgi	42.14	47.73
CDY37946	Canola	extracellular	40.13	45.28
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	34.45	42.56
TraesCS2A01G381200.1	Wheat	extracellular	40.13	40.68
Zm00001d027968_P001	Maize	cytosol, mitochondrion, plastid	40.47	39.03
KRH50677	Soybean	mitochondrion	14.05	38.18
TraesCS2A01G512400.1	Wheat	golgi	37.46	35.44
TraesCS1A01G365400.1	Wheat	golgi	30.77	33.33
TraesCS7A01G443100.1	Wheat	golgi, mitochondrion	37.79	33.14
TraesCS6A01G131900.1	Wheat	mitochondrion	36.12	32.93

Protein Annotations

EnsemblPlants:TraesCS5A01G313000.1	EnsemblPlantsGene:TraesCS5A01G313000	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:21.2.2.2.3	:

Description

No Description!

Coordinates

chr5A:+:524217501..524218400

Molecular Weight (calculated)

32192.4 Da

IEP (calculated)

7.650

GRAVY (calculated)

-0.062

Length

299 amino acids

Sequence
(BLAST)

001: MSSPTHVRKA LHLAAMKAKL QGVAGHRLLL VTALAAFLLL FSARTLFSSS SSSRGPGAAS RLSGDGSCSK LPAPVAEALV HYATSNVTPQ QTAAEIGVSL
101: RVLQRRSPCN FLVFGLGHDS PMWAALNHGG RTVFLEEDAS WIASVRSAHP GLESYHVTYD TRLTEADELI ALRDHQGCTA QPDLAAAAEA SCRLALRGLP
201: AVFHEVEWDL IMVDAPTGWT PEAPGRMGAI YTAGMAARAR RPGDGATDVF VHDVDRTVED RFSKAFLCDA YLTEQVGRIR HFVIPSHREK PGTPFCPQN

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.