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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, plastid

Predictor Summary:
  • plastid 3
  • endoplasmic reticulum 3
  • nucleus 1
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, mitochondrion, plastid
Any Predictor:mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:nucleus
Predotar:secretory
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU2Hr1G084420.1
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 HORVU2Hr1G084420.1 AT1G27300.1 21798944
AT1G33800.1 HORVU1Hr1G076010.1 AT3G16310.1 21798944
AT1G33800.1 HORVU3Hr1G026980.2 AT3G16310.1 21798944
AT1G33800.1 HORVU3Hr1G071060.1 AT3G16310.1 21798944
AT1G33800.1 HORVU2Hr1G081800.3 AT4G26455.1 21798944
AT1G33800.1 HORVU5Hr1G071910.1 AT4G26455.1 21798944
AT1G33800.1 HORVU7Hr1G048940.3 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G319700.1 Wheat mitochondrion 93.33 93.96
TraesCS5A01G313000.1 Wheat mitochondrion 92.0 92.31
TraesCS5B01G313900.1 Wheat golgi, unclear 92.0 92.0
EES16857 Sorghum mitochondrion 79.67 78.88
Os12t0204500-01 Rice endoplasmic reticulum, golgi 77.0 78.31
Zm00001d023950_P001 Maize mitochondrion 78.67 76.38
Zm00001d041782_P001 Maize plasma membrane 74.33 74.83
HORVU7Hr1G120340.1 Barley plastid 88.67 74.51
Zm00001d028737_P001 Maize golgi 37.33 66.27
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 52.67 56.63
VIT_12s0035g01340.t01 Wine grape golgi 52.33 55.28
KRH50678 Soybean cytosol 13.0 54.93
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 51.0 54.45
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 51.0 54.45
AT1G09610.1 Thale cress endoplasmic reticulum, golgi 51.0 54.26
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 50.67 54.09
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 52.67 53.74
Solyc01g103360.2.1 Tomato plasma membrane 49.0 53.45
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 54.67 53.25
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 44.0 52.38
PGSC0003DMT400064018 Potato plasma membrane 47.67 51.81
KRH06044 Soybean endoplasmic reticulum, golgi, vacuole 48.33 51.79
HORVU4Hr1G015310.3 Barley endoplasmic reticulum, plastid 60.67 51.41
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 51.33 51.33
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 50.33 51.19
CDY48797 Canola golgi, plasma membrane 50.67 51.18
AT4G09990.1 Thale cress golgi 49.33 51.03
VIT_12s0035g01170.t01 Wine grape endoplasmic reticulum, golgi, vacuole 49.33 51.03
Bra028013.1-P Field mustard golgi 50.33 51.01
CDY15292 Canola golgi 50.33 51.01
CDX93751 Canola golgi 50.33 51.01
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 50.33 50.84
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 50.0 50.68
CDX96332 Canola endoplasmic reticulum, extracellular 50.0 50.68
AT1G33800.1 Thale cress golgi, plasma membrane 49.67 50.17
CDX72815 Canola endoplasmic reticulum, extracellular 50.0 49.83
KRH64803 Soybean golgi, plasma membrane 49.33 48.37
Solyc06g064800.1.1 Tomato extracellular, golgi 42.0 47.73
CDY37946 Canola extracellular 40.0 45.28
HORVU3Hr1G108120.1 Barley extracellular, plasma membrane, vacuole 41.33 42.47
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 33.67 41.74
Zm00001d027968_P001 Maize cytosol, mitochondrion, plastid 41.0 39.68
HORVU0Hr1G015370.1 Barley cytosol, extracellular 31.0 38.91
KRH50677 Soybean mitochondrion 14.0 38.18
HORVU2Hr1G089430.1 Barley endoplasmic reticulum, peroxisome, plastid 40.67 35.88
HORVU2Hr1G113560.1 Barley golgi, plasma membrane 35.33 35.22
HORVU7Hr1G100750.3 Barley endoplasmic reticulum 38.0 33.63
Protein Annotations
EnsemblPlants:HORVU5Hr1G080580.1EnsemblPlantsGene:HORVU5Hr1G080580GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444PANTHER:PTHR31444:SF2
PFAM:PF04669SEG:segTIGRFAMs:TIGR01627TMHMM:TMhelixUniParc:UPI0002968ED9UniProt:M0ZA68
MapMan:21.2.2.2.3:::::
Description
No Description!
Coordinates
chrchr5H:-:561658455..561660285
Molecular Weight (calculated)
32289.4 Da
IEP (calculated)
7.064
GRAVY (calculated)
-0.079
Length
300 amino acids
Sequence
(BLAST)
001: MSSPTHARKQ ALHLASMKAK LHGFLGHRLL LVAALAAFLL LFSARTLFSS SSSHASRLRG GESDGDGSCS KLPGAVAEAL VHYATSNVTP QQTAAEIGVS
101: LRVLQRRSPC NFLVFGLGHD SPMWAALNHG GRTVFLEEDA SWIASVRAAH PGLESYHVTY DTRLTEADDL IALRDHPGCT AQPDLAAAAE ASCRLALRGL
201: PAVFHETEWD LIMVDAPTGW TPEAPGRMGA IYTAGMAARA RRPGDGATDV FVHDVDRAVE DSFSKAFLCE AYLAEQVGRI RHFVIPSHRE KPGTPFCPQN
Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)
001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
Arabidopsis Description
GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.