Factsheet for TraesCS5D01G319700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	endoplasmic reticulum, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G33800.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT1G33800.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS3D01G274500.1	AT3G16310.1	21798944
AT1G33800.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT1G33800.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G313000.1	Wheat	mitochondrion	98.32	97.99
TraesCS5B01G313900.1	Wheat	golgi, unclear	97.65	97.0
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	93.96	93.33
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	92.62	90.2
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	78.52	79.32
EES16857	Sorghum	mitochondrion	79.87	78.55
Zm00001d023950_P001	Maize	mitochondrion	78.86	76.05
Zm00001d041782_P001	Maize	plasma membrane	74.83	74.83
Zm00001d028737_P001	Maize	golgi	38.93	68.64
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	54.03	57.71
TraesCS4D01G086700.1	Wheat	mitochondrion	62.75	57.36
VIT_12s0035g01340.t01	Wine grape	golgi	53.36	55.99
KRH50678	Soybean	cytosol	13.09	54.93
Solyc11g031950.1.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	53.36	54.08
PGSC0003DMT400080082	Potato	endoplasmic reticulum, golgi	55.37	53.57
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	50.67	53.55
Solyc01g103360.2.1	Tomato	plasma membrane	49.33	53.45
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	50.34	53.38
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	50.34	53.38
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	50.0	53.02
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	44.63	52.78
PGSC0003DMT400064018	Potato	plasma membrane	47.99	51.81
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	50.34	51.72
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	51.68	51.33
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	47.99	51.07
AT1G71690.1	Thale cress	endoplasmic reticulum, golgi, plastid	50.34	50.85
CDY48797	Canola	golgi, plasma membrane	50.67	50.84
AT4G09990.1	Thale cress	golgi	49.33	50.69
Bra016131.1-P	Field mustard	endoplasmic reticulum, extracellular	50.34	50.68
CDX93751	Canola	golgi	50.34	50.68
CDX96332	Canola	endoplasmic reticulum, extracellular	50.34	50.68
Bra028013.1-P	Field mustard	golgi	50.34	50.68
CDY15292	Canola	golgi	50.34	50.68
Bra034460.1-P	Field mustard	golgi, plasma membrane, vacuole	50.34	50.51
CDX72815	Canola	endoplasmic reticulum, extracellular	50.34	49.83
AT1G33800.1	Thale cress	golgi, plasma membrane	49.66	49.83
KRH64803	Soybean	golgi, plasma membrane	50.0	48.69
Solyc06g064800.1.1	Tomato	extracellular, golgi	42.28	47.73
CDY37946	Canola	extracellular	39.6	44.53
TraesCS3D01G492500.1	Wheat	extracellular	42.28	43.15
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	34.56	42.56
TraesCS2D01G377700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	40.94	41.36
Zm00001d027968_P001	Maize	cytosol, mitochondrion, plastid	40.94	39.35
KRH50677	Soybean	mitochondrion	14.09	38.18
TraesCS2D01G513800.1	Wheat	golgi, plastid	37.25	35.13
TraesCS1D01G370900.1	Wheat	extracellular, plasma membrane	29.87	33.09
TraesCS7D01G432300.1	Wheat	golgi, mitochondrion	37.58	33.04
TraesCS6D01G121700.1	Wheat	mitochondrion	36.24	33.03

Protein Annotations

EnsemblPlants:TraesCS5D01G319700.1	EnsemblPlantsGene:TraesCS5D01G319700	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444	PANTHER:PTHR31444:SF2
PFAM:PF04669	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix	MapMan:21.2.2.2.3	:

Description

No Description!

Coordinates

chr5D:+:412352093..412352989

Molecular Weight (calculated)

31974.1 Da

IEP (calculated)

7.650

GRAVY (calculated)

-0.025

Length

298 amino acids

Sequence
(BLAST)

001: MSSPTHVRKA LHLAAMKAKL QGVAGHRLLL VAALAAFLLL FSARTLFSSS SSRGSGAASR LSGDGSCSKL PAPVAEALVH YATSNVTPQQ TAAEIGVSLR
101: VLQRRSPCNF LVFGLGHDSP MWAALNHGGR TVFLEEDASW IASVRSAHPG LESYHVTYDT RLTEADELIA LRDHPGCTAQ PDLAAAAEAS CRLALRGLPA
201: VFHEVEWDLI MVDAPTGWTP EAPGRMGAIY TAGMAARARR PGDGATDVFV HDVDRAVEDR FSKAFLCDAY LAEQVGRIRH FVIPSHREKP GTPFCPQN

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.