Factsheet for Zm00001d041782_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 5
endoplasmic reticulum 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028737_P001	Maize	golgi	51.01	89.94
EES16857	Sorghum	mitochondrion	82.89	81.52
Zm00001d023950_P001	Maize	mitochondrion	83.89	80.91
TraesCS5D01G319700.1	Wheat	mitochondrion	74.83	74.83
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	74.83	74.33
TraesCS5A01G313000.1	Wheat	mitochondrion	74.16	73.91
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	74.5	73.51
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	74.16	73.42
TraesCS5B01G313900.1	Wheat	golgi, unclear	73.49	73.0
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	72.15	72.88
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	74.16	72.22
HORVU7Hr1G120340.1	Barley	plastid	73.83	61.62
Zm00001d027968_P001	Maize	cytosol, mitochondrion, plastid	55.7	53.55
Zm00001d007269_P001	Maize	mitochondrion, plastid	52.01	47.4
Zm00001d007327_P001	Maize	plasma membrane	42.95	41.69
Zm00001d014532_P001	Maize	plasma membrane	36.58	33.96
Zm00001d002066_P001	Maize	plasma membrane	36.91	32.84
Zm00001d003239_P001	Maize	cytosol	18.12	32.34
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	34.9	32.2
Zm00001d001763_P001	Maize	plasma membrane	29.19	30.96

Protein Annotations

EnsemblPlants:Zm00001d041782_P001	EnsemblPlants:Zm00001d041782_T001	EnsemblPlantsGene:Zm00001d041782	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444
PANTHER:PTHR31444:SF2	PFAM:PF04669	ProteinID:ONM33658.1	SEG:seg	TIGRFAMs:TIGR01627	TMHMM:TMhelix
UniParc:UPI000194F6B0	UniProt:A0A1D6MY56	MapMan:21.2.2.2.3	:	:	:

Description

Plant-specific domain TIGR01627 family protein

Coordinates

chr3:+:137921659..137922555

Molecular Weight (calculated)

31682.1 Da

IEP (calculated)

8.505

GRAVY (calculated)

0.098

Length

298 amino acids

Sequence
(BLAST)

001: MSSPTHARKA IHLASLRARL AQQGKAGVAL RLLLAAALAG FLLVFAARTL VTSPVPASPS YSYSSEPQPH PLPLPVAEAL VHYATSNATP QQTAEEIGVA
101: LRVLQRRAPC NFLVFGLGLD SPMWAALNHG GRTVFLEEDA AWIGSVRGRH PALESHHVAY DTALADADAL LGLRAHPACV AQPDLAAAAA ASCRLALRGL
201: PPVFAGLDWD LVMVDAPTGW TPRAPGRMGA IYTAGMAARA RRPGAGPTHV FVHDVDRPVE DAFSRAFLCE GYLAEQVGRI RHFVIPSHRD KDGTPFCP

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.