Factsheet for Zm00001d003239_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002066_P001	Maize	plasma membrane	96.41	48.06
Zm00001d015307_P001	Maize	golgi, mitochondrion, plastid	59.28	30.65
Zm00001d014532_P001	Maize	plasma membrane	58.68	30.53
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	32.34	21.43
Zm00001d001763_P001	Maize	plasma membrane	34.13	20.28
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	32.34	19.35
VIT_12s0035g01340.t01	Wine grape	golgi	32.34	19.01
VIT_12s0035g01170.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	32.93	18.97
Solyc01g103360.2.1	Tomato	plasma membrane	31.14	18.91
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	30.54	18.15
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	30.54	18.15
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	30.54	18.15
Zm00001d041782_P001	Maize	plasma membrane	32.34	18.12
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	29.94	17.73
Zm00001d023950_P001	Maize	mitochondrion	32.34	17.48
PGSC0003DMT400064018	Potato	plasma membrane	28.74	17.39
Zm00001d007327_P001	Maize	plasma membrane	31.74	17.26
Zm00001d007269_P001	Maize	mitochondrion, plastid	26.35	13.46
Zm00001d028737_P001	Maize	golgi	6.59	6.51
Zm00001d027968_P001	Maize	cytosol, mitochondrion, plastid	7.78	4.19
KRH50677	Soybean	mitochondrion	1.2	1.82

Protein Annotations

EnsemblPlants:Zm00001d003239_P001	EnsemblPlants:Zm00001d003239_T001	EnsemblPlantsGene:Zm00001d003239	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	InterPro:Polysacc_synth_dom	PANTHER:PTHR31444
PANTHER:PTHR31444:SF3	PFAM:PF04669	ProteinID:ONM16495.1	TIGRFAMs:TIGR01627	UniParc:UPI0002215CDE	UniProt:A0A1D6E7U9
MapMan:35.1	:	:	:	:	:

Description

Protein IRX15-LIKE

Coordinates

chr2:+:37358483..37359061

Molecular Weight (calculated)

18155.2 Da

IEP (calculated)

5.275

GRAVY (calculated)

-0.344

Length

167 amino acids

Sequence
(BLAST)

001: MEAYDVSYTT KVRDFRDLLE AAGAARAKEC RPVQNLLFSE CRLAINDLPN DLYDVAWDVV LIDGPSGWNP NSPGRMPSIF TTAVLARSGA TAAKGPTDVL
101: VHDFQFEVEQ VLSREFLCDE NRVTGSGTPS LGHFVIRGGR AGAGDAFCSA QEDGSSGEKT CRRRSHK

Best Arabidopsis Sequence Match ( AT2G15440.1 )
(BLAST)

001: MKSNTNTNLI LFHHHSPLTS KSPSAVAAAN HHRFLFIFFL SFFTLLFSFS LFSSSIHSTT SSHSLSSSPS SSSLPPPVLA ALLHYTSSSP PNTSMSFLEL
101: STISNIIHSH GPACNLLIFG LTHESLLWRS INFQGRTVFV DESPYSVSKF EQSNPGVEAY EVVYSTKVSQ AKKLLGYYKT RPECRPVQNL LFSDCKLGIN
201: DLPNFVYEID WDVILIDGPR GYASDSPGRM APIFTSAVLA KSKDFGTKTK KTDVLVHEFG RKIERVYSEE FLCEENLIEV VGDLGHFVVA AAEERESYGD
301: GFCRNSTRLS ESFTAVSGGD EEKVGVDDE

Arabidopsis Description

At2g15440 [Source:UniProtKB/TrEMBL;Acc:Q9SJN8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.