Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20685 | Canola | endoplasmic reticulum, golgi, plasma membrane | 89.72 | 90.04 |
| Bra030789.1-P | Field mustard | endoplasmic reticulum, golgi | 89.36 | 89.68 |
| CDY31075 | Canola | endoplasmic reticulum, golgi, plasma membrane | 88.65 | 88.97 |
| Solyc01g103360.2.1 | Tomato | plasma membrane | 70.21 | 72.0 |
| PGSC0003DMT400064018 | Potato | plasma membrane | 69.5 | 71.01 |
| VIT_12s0035g01340.t01 | Wine grape | golgi | 70.57 | 70.07 |
| VIT_12s0035g01170.t01 | Wine grape | endoplasmic reticulum, golgi, vacuole | 70.57 | 68.62 |
| KRH06044 | Soybean | endoplasmic reticulum, golgi, vacuole | 65.6 | 66.07 |
| KRH50678 | Soybean | cytosol | 15.6 | 61.97 |
| GSMUA_Achr8P29140_001 | Banana | endoplasmic reticulum, golgi | 57.45 | 58.06 |
| AT1G33800.1 | Thale cress | golgi, plasma membrane | 59.93 | 56.9 |
| AT4G09990.1 | Thale cress | golgi | 58.51 | 56.9 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, golgi | 49.65 | 55.56 |
| AT1G71690.1 | Thale cress | endoplasmic reticulum, golgi, plastid | 54.26 | 51.86 |
| HORVU5Hr1G080580.1 | Barley | endoplasmic reticulum, mitochondrion, plastid | 54.26 | 51.0 |
| TraesCS5D01G319700.1 | Wheat | mitochondrion | 53.55 | 50.67 |
| TraesCS5B01G313900.1 | Wheat | golgi, unclear | 53.55 | 50.33 |
| TraesCS5A01G313000.1 | Wheat | mitochondrion | 53.19 | 50.17 |
| TraesCS7A01G560100.1 | Wheat | mitochondrion, plastid | 53.19 | 49.67 |
| Os12t0204500-01 | Rice | endoplasmic reticulum, golgi | 51.42 | 49.15 |
| TraesCS7B01G485000.1 | Wheat | mitochondrion, plastid | 52.13 | 48.84 |
| TraesCS7D01G549800.1 | Wheat | mitochondrion, plastid | 52.48 | 48.37 |
| EES16857 | Sorghum | mitochondrion | 51.77 | 48.18 |
| AT1G67330.1 | Thale cress | endoplasmic reticulum, golgi | 43.62 | 42.27 |
| TraesCS4A01G227100.1 | Wheat | mitochondrion | 47.52 | 41.36 |
| HORVU7Hr1G120340.1 | Barley | plastid | 52.13 | 41.18 |
| AT1G27930.1 | Thale cress | endoplasmic reticulum, plasma membrane | 42.2 | 41.18 |
| KRH50677 | Soybean | mitochondrion | 15.96 | 40.91 |
| TraesCS4B01G089200.1 | Wheat | mitochondrion | 46.81 | 40.87 |
| TraesCS4D01G086700.1 | Wheat | mitochondrion | 46.81 | 40.49 |
| HORVU4Hr1G015310.3 | Barley | endoplasmic reticulum, plastid | 47.16 | 37.57 |
| Os11t0242600-00 | Rice | mitochondrion | 39.36 | 35.13 |
| EES08266 | Sorghum | mitochondrion | 40.43 | 34.76 |
| Zm00001d003239_P001 | Maize | cytosol | 17.73 | 29.94 |
| AT3G50220.1 | Thale cress | endoplasmic reticulum, golgi | 31.56 | 27.64 |
| AT5G67210.1 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, plastid | 30.85 | 27.44 |
| AT2G15440.1 | Thale cress | plastid | 31.91 | 27.36 |
| AT4G24910.1 | Thale cress | plastid | 30.5 | 27.3 |
Protein Annotations
| MapMan:21.2.2.2.3 | EntrezGene:837488 | UniProt:A0A178W7U8 | ProteinID:AAC33218.1 | ProteinID:AEE28468.1 | ArrayExpress:AT1G09610 |
| EnsemblPlantsGene:AT1G09610 | RefSeq:AT1G09610 | TAIR:AT1G09610 | RefSeq:AT1G09610-TAIR-G | EnsemblPlants:AT1G09610.1 | TAIR:AT1G09610.1 |
| Unigene:At.66929 | EMBL:BT010727 | EMBL:BT011658 | GO:GO:0000139 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016740 | GO:GO:0030775 | GO:GO:0032259 | GO:GO:0045491 | GO:GO:0045492 |
| InterPro:IRX15/IRX15L/IGXM | EMBL:JX914594 | RefSeq:NP_172432.1 | ProteinID:OAP13132.1 | PFAM:PF04669 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009062 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31444 | PANTHER:PTHR31444:SF4 |
| InterPro:Polysacc_synth_dom | UniProt:Q6NMK1 | TIGRFAMs:TIGR01627 | TMHMM:TMhelix | UniParc:UPI0000162CEB | SEG:seg |
Description
GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
Coordinates
chr1:+:3111694..3112873
Molecular Weight (calculated)
31884.4 Da
IEP (calculated)
8.459
GRAVY (calculated)
-0.361
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.