Factsheet for VIT_12s0035g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 5
endoplasmic reticulum 6
vacuole 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01340.t01	Wine grape	golgi	73.45	75.0
Solyc01g103360.2.1	Tomato	plasma membrane	67.59	71.27
PGSC0003DMT400064018	Potato	plasma membrane	67.24	70.65
AT1G09610.1	Thale cress	endoplasmic reticulum, golgi	68.62	70.57
Bra030789.1-P	Field mustard	endoplasmic reticulum, golgi	67.59	69.75
CDY20685	Canola	endoplasmic reticulum, golgi, plasma membrane	67.24	69.39
CDY31075	Canola	endoplasmic reticulum, golgi, plasma membrane	66.9	69.04
KRH06044	Soybean	endoplasmic reticulum, golgi, vacuole	63.45	65.71
VIT_00s0238g00020.t01	Wine grape	extracellular, plasma membrane	63.1	61.0
KRH50678	Soybean	cytosol	14.83	60.56
GSMUA_Achr8P29140_001	Banana	endoplasmic reticulum, golgi	56.9	59.14
GSMUA_Achr10P...	Banana	endoplasmic reticulum, golgi	49.66	57.14
VIT_00s0238g00030.t01	Wine grape	extracellular, plasma membrane	43.1	51.65
TraesCS5D01G319700.1	Wheat	mitochondrion	51.72	50.34
TraesCS5B01G313900.1	Wheat	golgi, unclear	51.38	49.67
TraesCS5A01G313000.1	Wheat	mitochondrion	51.03	49.5
HORVU5Hr1G080580.1	Barley	endoplasmic reticulum, mitochondrion, plastid	51.03	49.33
TraesCS7B01G485000.1	Wheat	mitochondrion, plastid	51.03	49.17
TraesCS7A01G560100.1	Wheat	mitochondrion, plastid	51.03	49.01
TraesCS7D01G549800.1	Wheat	mitochondrion, plastid	51.03	48.37
EES16857	Sorghum	mitochondrion	50.34	48.18
Os12t0204500-01	Rice	endoplasmic reticulum, golgi	48.97	48.14
VIT_14s0068g01970.t01	Wine grape	endoplasmic reticulum, plasma membrane	40.34	41.49
HORVU7Hr1G120340.1	Barley	plastid	51.03	41.46
TraesCS4A01G227100.1	Wheat	mitochondrion	45.86	41.05
TraesCS4B01G089200.1	Wheat	mitochondrion	45.52	40.87
VIT_01s0010g03680.t01	Wine grape	endoplasmic reticulum, golgi	39.31	40.57
TraesCS4D01G086700.1	Wheat	mitochondrion	45.52	40.49
VIT_03s0063g00030.t01	Wine grape	plastid	29.66	39.09
KRH50677	Soybean	mitochondrion	14.83	39.09
HORVU4Hr1G015310.3	Barley	endoplasmic reticulum, plastid	45.52	37.29
EES08266	Sorghum	mitochondrion	40.0	35.37
Os11t0242600-00	Rice	mitochondrion	37.93	34.81
Zm00001d003239_P001	Maize	cytosol	18.97	32.93
VIT_07s0031g00110.t01	Wine grape	golgi	32.41	30.32

Protein Annotations

EntrezGene:100852653	wikigene:100852653	MapMan:21.2.2.2.3	EMBL:AM425489	ProteinID:CAN66688	ProteinID:CAN66688.1
ProteinID:CCB55039	ProteinID:CCB55039.1	UniProt:F6HK36	EMBL:FN595990	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045492	InterPro:IRX15/IRX15L/IGXM	EntrezGene:LOC100852653
wikigene:LOC100852653	PFAM:PF04669	PANTHER:PTHR31444	PANTHER:PTHR31444:SF4	InterPro:Polysacc_synth_dom	TIGRFAMs:TIGR01627
TMHMM:TMhelix	UniParc:UPI00015CC259	ArrayExpress:VIT_12s0035g01170	EnsemblPlantsGene:VIT_12s0035g01170	EnsemblPlants:VIT_12s0035g01170.t01	RefSeq:XP_003633419
RefSeq:XP_003633419.1	RefSeq:XP_010657964.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:20973787..20974667

Molecular Weight (calculated)

32628.5 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.253

Length

290 amino acids

Sequence
(BLAST)

001: MRPKSQALNL RLLLLGIFFS FVLLFALRSS LSSPQEDLSP ISPTSLPKVS NTIKEGKAAN CSPTCTKIPT SLAQALIHYT TSTITPQQTL KEISVTSKIL
101: VNKSPCNFLV FGLGHDSLMW RELNHGGRTI FLEEDEAWIE QIRQRFPKLE SYHVMYDSKV NQADNLMEVG KGPECIGVGD IRHSTCQLAL KGLPNEVYDI
201: KWDLIMVDAP TGYYEEAPGR MAAIYTAGMM ARNRKDGETD VFVHDVNRVV EDKFSRAFLC DGYMRKQTGR LRHFRIPSHR DGSAKPFCPL

Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)

001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP

Arabidopsis Description

GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [golgi,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.