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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: golgi, unclear

Predictor Summary:
  • plastid 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:golgi, unclear
Any Predictor:endoplasmic reticulum, mitochondrion, plastid
ChloroP:plastid
MultiLoc:endoplasmic reticulum
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 golgi: 25769308
unclear: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G331000.1
TraesCS2A01G346700.1
TraesCS2B01G351300.1
TraesCS2B01G365000.1
TraesCS2D01G332000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G33800.1 TraesCS2A01G346700.1 AT1G27300.1 21798944
AT1G33800.1 TraesCS2B01G365000.1 AT1G27300.1 21798944
AT1G33800.1 TraesCS2D01G345400.1 AT1G27300.1 21798944
AT1G33800.1 TraesCS1A01G340600.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS1D01G342600.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3A01G274800.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3A01G313000.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3B01G158900.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3B01G308400.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3D01G141300.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS3D01G274500.1 AT3G16310.1 21798944
AT1G33800.1 TraesCS2A01G331000.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS2B01G351300.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS2D01G332000.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS5A01G257000.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS5B01G256500.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS5D01G265600.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS7A01G240200.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS7B01G135800.1 AT4G26455.1 21798944
AT1G33800.1 TraesCS7D01G238200.1 AT4G26455.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G313000.1 Wheat mitochondrion 97.33 97.66
TraesCS5D01G319700.1 Wheat mitochondrion 97.0 97.65
HORVU5Hr1G080580.1 Barley endoplasmic reticulum, mitochondrion, plastid 92.0 92.0
TraesCS7B01G485000.1 Wheat mitochondrion, plastid 87.67 87.38
Os12t0204500-01 Rice endoplasmic reticulum, golgi 78.0 79.32
EES16857 Sorghum mitochondrion 78.33 77.56
Zm00001d023950_P001 Maize mitochondrion 77.33 75.08
Zm00001d041782_P001 Maize plasma membrane 73.0 73.49
Zm00001d028737_P001 Maize golgi 37.67 66.86
GSMUA_Achr8P29140_001 Banana endoplasmic reticulum, golgi 53.33 57.35
TraesCS4B01G089200.1 Wheat mitochondrion 61.67 57.28
VIT_12s0035g01340.t01 Wine grape golgi 52.67 55.63
KRH50678 Soybean cytosol 13.0 54.93
Solyc11g031950.1.1 Tomato endoplasmic reticulum, plasma membrane, vacuole 52.67 53.74
Bra030789.1-P Field mustard endoplasmic reticulum, golgi 50.33 53.74
CDY20685 Canola endoplasmic reticulum, golgi, plasma membrane 50.33 53.74
AT1G09610.1 Thale cress endoplasmic reticulum, golgi 50.33 53.55
Solyc01g103360.2.1 Tomato plasma membrane 49.0 53.45
CDY31075 Canola endoplasmic reticulum, golgi, plasma membrane 50.0 53.38
PGSC0003DMT400080082 Potato endoplasmic reticulum, golgi 54.67 53.25
GSMUA_Achr10P... Banana endoplasmic reticulum, golgi 44.0 52.38
PGSC0003DMT400064018 Potato plasma membrane 47.67 51.81
VIT_12s0035g01170.t01 Wine grape endoplasmic reticulum, golgi, vacuole 49.67 51.38
VIT_00s0238g00020.t01 Wine grape extracellular, plasma membrane 51.33 51.33
KRH06044 Soybean endoplasmic reticulum, golgi, vacuole 47.67 51.07
AT1G71690.1 Thale cress endoplasmic reticulum, golgi, plastid 50.0 50.85
CDY48797 Canola golgi, plasma membrane 50.33 50.84
Bra016131.1-P Field mustard endoplasmic reticulum, extracellular 50.0 50.68
CDX93751 Canola golgi 50.0 50.68
CDY15292 Canola golgi 50.0 50.68
CDX96332 Canola endoplasmic reticulum, extracellular 50.0 50.68
Bra028013.1-P Field mustard golgi 50.0 50.68
Bra034460.1-P Field mustard golgi, plasma membrane, vacuole 50.0 50.51
AT4G09990.1 Thale cress golgi 48.67 50.34
CDX72815 Canola endoplasmic reticulum, extracellular 50.0 49.83
AT1G33800.1 Thale cress golgi, plasma membrane 49.33 49.83
KRH64803 Soybean golgi, plasma membrane 49.0 48.04
Solyc06g064800.1.1 Tomato extracellular, golgi 42.0 47.73
CDY37946 Canola extracellular 39.33 44.53
VIT_00s0238g00030.t01 Wine grape extracellular, plasma membrane 34.33 42.56
TraesCS3B01G545900.1 Wheat extracellular 41.33 42.32
TraesCS2B01G398500.1 Wheat extracellular 39.67 40.34
Zm00001d027968_P001 Maize cytosol, mitochondrion, plastid 39.67 38.39
KRH50677 Soybean mitochondrion 13.67 37.27
TraesCS2B01G540300.1 Wheat golgi 37.33 35.44
TraesCS1B01G382900.1 Wheat plasma membrane, vacuole 30.67 33.58
TraesCS7B01G341900.1 Wheat golgi, mitochondrion 37.33 32.75
TraesCS6B01G160200.1 Wheat mitochondrion 34.67 31.33
Protein Annotations
EnsemblPlants:TraesCS5B01G313900.1EnsemblPlantsGene:TraesCS5B01G313900GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0045492InterPro:IRX15/IRX15L/IGXMInterPro:Polysacc_synth_domPANTHER:PTHR31444PANTHER:PTHR31444:SF2
PFAM:PF04669SEG:segTIGRFAMs:TIGR01627TMHMM:TMhelixMapMan:21.2.2.2.3:
Description
No Description!
Coordinates
chr5B:+:496485120..496486022
Molecular Weight (calculated)
32162.4 Da
IEP (calculated)
7.650
GRAVY (calculated)
-0.050
Length
300 amino acids
Sequence
(BLAST)
001: MSSPTHVRKA LHLAAMKAKL QGVVGHRLLL VTGLAAFLLL FSARTLFSSS SRGSGAASRL SGGAGDGSCS KLPAPVAEAL VHYATSNVTP QQTAGEIGVS
101: LRVLQRRSPC NFLVFGLGHD SPMWAALNHG GRTVFLEEDA SWIASVRSAH PGLESYHVTY DTRLTEADEL IALRDHPGCT AQPDLAAAAE ASCRLALRGL
201: PAVFHEVEWD LIMVDAPTGW TPEAPGRMGA IYTAGMAARA RRPGDGATDV FVHDVDRTVE DRFSKAFLCD AYLTEQVGRI RHFVIPSHRE KPGTPFCPQN
Best Arabidopsis Sequence Match ( AT1G09610.1 )
(BLAST)
001: MRPKANQNHK LKVLLVFLLA TLILIFIVRS TLTSSQEHQT PQETRSTRCS GACNKLPRSL AQALIHYSTS VITPQQTLKE IAVSSRVLGK KSPCNFLVFG
101: LGHDSLMWSS LNYGGRTVFL EEDEAWIKQI KRRFPMLESY HVTYDSKVNQ ADNLIEVGKG PECTAIGDPR YSMCQLALKG LPAEIYETGW DLIMVDAPTG
201: YYDEAPGRMT AIYTAGMMAR NRKQGGETDV FVHDVNREIE DKFSKAFLCE GYMKKQEGRL RHFIIPSYRD GSESESNRPF CP
Arabidopsis Description
GXM1GXM3 [Source:UniProtKB/TrEMBL;Acc:A0A178W7U8]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.