Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G240200.1 | Wheat | cytosol | 88.83 | 87.68 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 85.85 | 85.69 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 81.01 | 76.18 |
| Os08t0497900-01 | Rice | nucleus | 43.76 | 50.87 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 50.28 | 48.91 |
| EES14314 | Sorghum | nucleus | 38.92 | 41.3 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 30.35 | 27.39 |
| GSMUA_Achr10P... | Banana | cytosol | 25.51 | 27.18 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 19.18 | 25.75 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 28.31 | 25.59 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 28.12 | 24.59 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 18.25 | 24.56 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.08 | 24.18 |
| CDY24192 | Canola | plastid | 13.22 | 23.43 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 19.18 | 23.3 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.06 | 23.1 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.95 | 22.87 |
| CDX82542 | Canola | plastid | 18.81 | 22.8 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 21.6 | 22.75 |
| KRH56393 | Soybean | cytosol | 24.39 | 22.32 |
| CDX89333 | Canola | nucleus | 20.3 | 22.02 |
| KRH62532 | Soybean | endoplasmic reticulum | 23.84 | 21.88 |
| Bra026434.1-P | Field mustard | nucleus | 20.11 | 21.82 |
| AT5G56210.1 | Thale cress | nucleus | 20.67 | 21.81 |
| PGSC0003DMT400056956 | Potato | nucleus | 24.02 | 21.57 |
| CDX94330 | Canola | nucleus | 19.55 | 21.38 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 10.61 | 20.65 |
| CDY17403 | Canola | nucleus | 10.61 | 20.65 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.74 | 20.46 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 10.24 | 19.71 |
| AT4G26455.1 | Thale cress | nucleus | 17.88 | 19.63 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G238200.1 | EnsemblPlantsGene:TraesCS7D01G238200 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF4 | SEG:seg |
| TMHMM:TMhelix | MapMan:20.4.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:203404975..203407330
Molecular Weight (calculated)
57652.1 Da
IEP (calculated)
5.039
GRAVY (calculated)
-0.550
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTATDMDR MANGAVESSA ESPAAEAPPE ARTKGRGLRR WRRIQREHRA EGAAAPATAA GGRGGANDDA AQLHKRRLPL GAAAPPKGKH EVAVEEAESS
101: TASVESRFVP LEQAPAPAPA PAKLDPDLGL LVSSVGFSVG AGGADSDNGE DRSSKSSTAA SAPRHDFPRE RDRLRAHTAA SIHGKNHRSA RARADRPSAH
201: TAFSQAEAGN SRSSVESDRR SSNAVHGRKQ GVGSIGNGIH DHSDEGQPSD EMRSTAGGYC TQSGSSVVGR LGVGNGDSGD ADVEDTFDEG GAGKGEMGLE
301: MNSCANPYAK SILLLQRTQE ALENEIQNFV VIGKESTDDL EAHDDEWSNS LHIEESVEEA NEKMKDLESR MEQASILIKE KDSIILELEA LSRTRAWRSA
401: IQSANNQLLQ PDLDQLLQEK MEAEIQCIIL TRASQTWTPV AEDRKALYED QKCLLGDYKQ LELKLRGAEN RAAILGEMVE KLEAHCRELS ASAEILQLQS
501: RTSTASLLCF IQFILLLIAI GIYVVRLSPS STELVPT
101: TASVESRFVP LEQAPAPAPA PAKLDPDLGL LVSSVGFSVG AGGADSDNGE DRSSKSSTAA SAPRHDFPRE RDRLRAHTAA SIHGKNHRSA RARADRPSAH
201: TAFSQAEAGN SRSSVESDRR SSNAVHGRKQ GVGSIGNGIH DHSDEGQPSD EMRSTAGGYC TQSGSSVVGR LGVGNGDSGD ADVEDTFDEG GAGKGEMGLE
301: MNSCANPYAK SILLLQRTQE ALENEIQNFV VIGKESTDDL EAHDDEWSNS LHIEESVEEA NEKMKDLESR MEQASILIKE KDSIILELEA LSRTRAWRSA
401: IQSANNQLLQ PDLDQLLQEK MEAEIQCIIL TRASQTWTPV AEDRKALYED QKCLLGDYKQ LELKLRGAEN RAAILGEMVE KLEAHCRELS ASAEILQLQS
501: RTSTASLLCF IQFILLLIAI GIYVVRLSPS STELVPT
001: MFFFSCVCRI ISSTLIIFVD TASPGNNVGG FLRRTLNSLG FCFSCSSVTQ ASSRWIVLGM NESVPDSVED NGNSVPANGL LVLPDNDHEE GGVGSPQRSN
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
Arabidopsis Description
WIP3WPP domain interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSR4]
SUBAcon: [plasma membrane,extracellular,vacuole]
SUBAcon: [plasma membrane,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.