Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75706 | Canola | cytosol, golgi, nucleus | 46.72 | 57.62 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 43.05 | 55.89 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 42.66 | 55.25 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 45.95 | 53.85 |
| CDX82542 | Canola | plastid | 45.56 | 53.27 |
| CDY24192 | Canola | plastid | 30.89 | 52.81 |
| AT5G56210.1 | Thale cress | nucleus | 27.41 | 27.9 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 30.7 | 25.9 |
| AT4G26455.1 | Thale cress | nucleus | 23.75 | 25.15 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 13.13 | 22.82 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 12.93 | 22.19 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.71 | 21.84 |
| PGSC0003DMT400056956 | Potato | nucleus | 24.52 | 21.24 |
| GSMUA_Achr10P... | Banana | cytosol | 20.46 | 21.03 |
| KRH56393 | Soybean | cytosol | 23.75 | 20.95 |
| KRH62532 | Soybean | endoplasmic reticulum | 23.36 | 20.68 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 21.62 | 20.59 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 23.55 | 20.5 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 20.85 | 20.07 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 20.46 | 19.74 |
| Solyc07g066170.2.1 | Tomato | nucleus | 12.74 | 19.7 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 22.59 | 19.7 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 20.66 | 19.63 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 20.66 | 19.6 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 11.58 | 19.48 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 20.27 | 19.02 |
| OQU81760 | Sorghum | nucleus | 15.64 | 19.01 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 20.08 | 18.98 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 20.46 | 18.56 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 14.29 | 18.45 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 19.11 | 18.27 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 16.22 | 18.18 |
| Zm00001d005997_P002 | Maize | plastid | 18.34 | 17.66 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 16.99 | 17.25 |
| Os09t0481300-01 | Rice | nucleus | 17.37 | 17.08 |
| Os08t0497900-01 | Rice | nucleus | 15.06 | 16.88 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 16.6 | 16.86 |
| EES14314 | Sorghum | nucleus | 16.22 | 16.6 |
| Zm00001d025667_P001 | Maize | cytosol | 15.25 | 16.19 |
Protein Annotations
| ArrayExpress:AT3G13360 | EnsemblPlants:AT3G13360.2 | EnsemblPlantsGene:AT3G13360 | EntrezGene:820536 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:ANM65622.1 | RefSeq:AT3G13360 |
| RefSeq:AT3G13360-TAIR-G | RefSeq:NP_001327578.1 | SEG:seg | SignalP:SignalP-noTM | Symbol:WIP3 | TAIR:AT3G13360 |
| TMHMM:TMhelix | Unigene:At.20916 | UniParc:UPI000848894F | UniProt:A0A1I9LSR4 | MapMan:20.4.2.1.2 | : |
Description
WIP3WPP domain interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSR4]
Coordinates
chr3:-:4338286..4340446
Molecular Weight (calculated)
56674.7 Da
IEP (calculated)
5.949
GRAVY (calculated)
-0.451
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFFSCVCRI ISSTLIIFVD TASPGNNVGG FLRRTLNSLG FCFSCSSVTQ ASSRWIVLGM NESVPDSVED NGNSVPANGL LVLPDNDHEE GGVGSPQRSN
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
101: SVESPGGSVH STRKGFGLKK WRRIKRDGPV RDEAAPVDDG SKLLKRGLAG LVNPPSKHVE FSSVEARQSS EGSVGSVNMV HHPGVANGFS PDIGCMFAVG
201: QAFEKSEEHS GNTIGGKNVV GGKVVSGSQE KLWSDTIKRA SEERGDIEKE KPCSSLDSDL RSSDFVFSTG SVSVGNHGEK DERLTMNYIG GFSNEGQVKE
301: EVQTYSRSEN GNKEDDGESK KNNNHWADKD ALADSIRSFA VLQEVLWKEV QSFQELGKES VLLHSNTDEL SSDQPSHQNC KEDNSTSSGS KALILKEKVK
401: LLEHKLEEAR AALEAKEARI QELENSKIES ELECIFQRKI ETEIEHLMLT RSLSSLQVLQ ETKKLHSLKE DPVSNRGNIL GKTCKLGFYI LTQLILLVSI
501: LRFLVLQFSP ASRLVIPT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.