Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81760 | Sorghum | nucleus | 88.31 | 63.85 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 57.79 | 58.94 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 56.17 | 58.05 |
| Zm00001d025667_P001 | Maize | cytosol | 83.12 | 52.46 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 58.77 | 39.18 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 60.71 | 36.67 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 59.09 | 35.69 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 22.08 | 24.64 |
| CDY17403 | Canola | nucleus | 22.08 | 24.64 |
| Solyc07g066170.2.1 | Tomato | nucleus | 25.65 | 23.58 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 21.1 | 23.3 |
| CDY24192 | Canola | plastid | 18.83 | 19.14 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 24.68 | 18.95 |
| GSMUA_Achr10P... | Banana | cytosol | 30.19 | 18.45 |
| Zm00001d005997_P002 | Maize | plastid | 29.87 | 17.1 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 27.92 | 14.48 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 27.92 | 14.45 |
| AT5G56210.1 | Thale cress | nucleus | 23.05 | 13.95 |
| PGSC0003DMT400056956 | Potato | nucleus | 26.95 | 13.88 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 17.86 | 13.78 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.51 | 13.57 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 17.21 | 13.25 |
| PGSC0003DMT400022426 | Potato | nucleus | 25.0 | 13.14 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 25.65 | 12.87 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 18.18 | 12.67 |
| KRH56393 | Soybean | cytosol | 23.38 | 12.27 |
| CDX94330 | Canola | nucleus | 19.48 | 12.22 |
| CDX82542 | Canola | plastid | 17.53 | 12.19 |
| KRH62532 | Soybean | endoplasmic reticulum | 22.73 | 11.97 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.48 | 11.58 |
| CDX89333 | Canola | nucleus | 18.51 | 11.52 |
| Bra026434.1-P | Field mustard | nucleus | 18.51 | 11.52 |
| AT4G26455.1 | Thale cress | nucleus | 17.21 | 10.84 |
Protein Annotations
| EnsemblPlants:Zm00001d003334_P001 | EnsemblPlants:Zm00001d003334_T001 | EnsemblPlantsGene:Zm00001d003334 | EntrezGene:100193088 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF7 | ProteinID:ONM16784.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00022107E7 | UniProt:A0A1D6E8P9 | MapMan:20.4.2.1.2 | : | : |
Description
WPP domain-interacting protein 2
Coordinates
chr2:+:40564802..40567941
Molecular Weight (calculated)
35368.7 Da
IEP (calculated)
4.370
GRAVY (calculated)
-0.638
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MRAGDAFSNY RCRTMSMNYD GDRSEDRQSE EVQSAYKRDS DVGEEMIISS EEQNDENEWS WVNQDRNGDP FAESVSSLHT TQQILENEIR KLSELGKELE
101: AEESTSGNKD QDVILLPYSE ADVLELSEKM EHLEQKVKEA SNTIREKDLM LSKLQILIGT ADRAALEEEL EEAAASIDQL ETELERHLQE KLEAEIQCLL
201: MLKASQNWQV RAEDRVALEE HRALSAGDKT RMLLKLRETE SKIVMLKEQV DKLEVREKEL NRTTEVLKMQ SRTFRASLFG LVQLVMLCLS LKVFFARVSA
301: PFDEAVPT
101: AEESTSGNKD QDVILLPYSE ADVLELSEKM EHLEQKVKEA SNTIREKDLM LSKLQILIGT ADRAALEEEL EEAAASIDQL ETELERHLQE KLEAEIQCLL
201: MLKASQNWQV RAEDRVALEE HRALSAGDKT RMLLKLRETE SKIVMLKEQV DKLEVREKEL NRTTEVLKMQ SRTFRASLFG LVQLVMLCLS LKVFFARVSA
301: PFDEAVPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.