Factsheet for Zm00001d043604_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d010047_P001
Zm00001d017768_P006
Zm00001d020667_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d038964_P001
Zm00001d039272_P003
Zm00001d051562_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	Zm00001d017768_P006	AT3G50910.1	21798944
AT3G63130.1	Zm00001d020667_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d038964_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d051562_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d003334_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d005997_P002	AT4G26455.1	17600715
AT3G63130.1	Zm00001d020879_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d025667_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d003334_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d005997_P002	AT4G26455.1	20579133
AT3G63130.1	Zm00001d020879_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d025667_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d010047_P001	AT5G11390.1	18591351
AT3G63130.1	Zm00001d039272_P003	AT5G11390.1	18591351
AT3G63130.1	Zm00001d003334_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d005997_P002	AT5G56210.1	17600715
AT3G63130.1	Zm00001d020879_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d025667_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d003334_P001	AT5G56210.1	20579133
AT3G63130.1	Zm00001d005997_P002	AT5G56210.1	20579133
AT3G63130.1	Zm00001d020879_P001	AT5G56210.1	20579133
AT3G63130.1	Zm00001d025667_P001	AT5G56210.1	20579133
AT5G19320.1	Zm00001d003334_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d005997_P002	AT4G26455.1	17600715
AT5G19320.1	Zm00001d020879_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d025667_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d010047_P001	AT5G11390.1	18591351
AT5G19320.1	Zm00001d039272_P003	AT5G11390.1	18591351
AT5G19320.1	Zm00001d003334_P001	AT5G56210.1	17600715
AT5G19320.1	Zm00001d005997_P002	AT5G56210.1	17600715
AT5G19320.1	Zm00001d020879_P001	AT5G56210.1	17600715
AT5G19320.1	Zm00001d025667_P001	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046105_P001	Maize	peroxisome	56.61	51.7
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	40.97	42.06
Zm00001d051112_P001	Maize	plasma membrane	39.85	41.47
Zm00001d034691_P001	Maize	cytosol	28.68	40.53
EES05430	Sorghum	cytosol, nucleus, plastid	39.11	38.67
EES05435	Sorghum	cytosol, plastid	40.04	38.53
CDY44911	Canola	cytosol	17.5	37.45
Bra020034.1-P	Field mustard	cytosol	17.13	37.4
Os05t0543200-01	Rice	plasma membrane	37.24	36.76
TraesCS1A01G256200.1	Wheat	cytosol	37.62	36.73
TraesCS1B01G266900.1	Wheat	plastid	37.62	36.66
TraesCS1D01G255600.1	Wheat	cytosol, plastid	37.62	36.4
TraesCS3D01G394300.1	Wheat	cytosol, plastid	36.87	35.74
TraesCS3B01G433100.1	Wheat	cytosol, plastid	36.87	35.74
HORVU3Hr1G090080.1	Barley	plastid	36.87	35.74
TraesCS3A01G400100.1	Wheat	plastid	37.06	33.79
KRG91256	Soybean	endoplasmic reticulum	32.77	33.08
GSMUA_Achr11P...	Banana	cytosol, plastid	33.71	33.03
KRH35557	Soybean	endoplasmic reticulum, nucleus	32.77	33.02
PGSC0003DMT400086322	Potato	cytosol	32.22	32.4
Solyc09g065190.1.1	Tomato	plastid	32.03	32.21
KRH32020	Soybean	cytosol	31.84	32.02
VIT_07s0104g00520.t01	Wine grape	plastid	32.22	31.98
CDX92540	Canola	cytosol	33.15	31.79
AT5G19320.1	Thale cress	cytosol	32.22	31.74
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	30.73	31.37
KRH71426	Soybean	nucleus	31.1	31.33
HORVU1Hr1G063300.3	Barley	plastid	37.8	31.09
PGSC0003DMT400023310	Potato	plastid	31.66	30.74
Solyc01g079680.2.1	Tomato	plastid	31.47	30.73
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	30.73	30.61
Bra007730.1-P	Field mustard	cytosol, plastid	29.24	29.35
Zm00001d052426_P001	Maize	cytosol	7.45	29.2
CDY56462	Canola	cytosol, plastid	29.05	29.16
AT3G63130.1	Thale cress	plastid	28.86	28.97
CDX89174	Canola	plastid	28.49	28.39
Bra040432.1-P	Field mustard	plastid	28.31	28.36
CDY02566	Canola	cytosol	10.06	27.27
CDX76683	Canola	mitochondrion	29.42	26.78
GSMUA_Achr8P13660_001	Banana	cytosol	28.68	25.16
CDX93931	Canola	cytosol	15.64	24.85
CDX93932	Canola	cytosol	3.91	18.26
CDY16082	Canola	cytosol	3.35	15.93
Bra026911.1-P	Field mustard	cytosol	3.91	15.91
AT3G06000.1	Thale cress	cytosol	6.15	15.64
Bra013834.1-P	Field mustard	cytosol	3.72	15.15
Bra020788.1-P	Field mustard	cytosol, mitochondrion	6.33	14.41
CDY27720	Canola	cytosol, mitochondrion	6.15	13.58
Os05t0409200-00	Rice	cytosol	2.61	13.08
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	4.47	12.57
Zm00001d044774_P004	Maize	plastid	10.8	8.94

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:23.5.1.5	Gene3D:3.80.10.10	UniProt:A0A1D6NDJ7	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat
InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	InterPro:IPR032675	InterPro:LRR_dom_sf	ProteinID:ONM38563.1
PFAM:PF01301	PFAM:PF13943	PRINTS:PR00742	PANTHER:PTHR23421	PANTHER:PTHR23421:SF68	SMART:SM00368
SUPFAM:SSF51445	SUPFAM:SSF52047	UniParc:UPI0008434553	InterPro:WPP_dom	EnsemblPlantsGene:Zm00001d043604	EnsemblPlants:Zm00001d043604_P002
EnsemblPlants:Zm00001d043604_T002	SEG:seg	:	:	:	:

Description

RAN GTPase-activating protein 2

Coordinates

chr3:+:204976824..204980224

Molecular Weight (calculated)

60570.4 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.395

Length

537 amino acids

Sequence
(BLAST)

001: MRVREMREMI IVREKTENKR RRGIEIHVGS SVVQLYAKES SKMMLEVLRK GPRTTAELEA PVADTSLVSA DAPRVLADIV LDISGGEHAF IEADETKELL
101: SPLTKPGNSY KRICFSNRSF GIGAANVAGP ILDSVKNQLT KVDISDFVAG RSEDEALDVM RIFSKALEGS VLRYLNISDN ALGEKDVRAF NELLKSQESL
201: EELYVMNDGI SEEAAKALYE LIPATEKLKV LHFHNNMTRD EVELNKQISC TLPLTNKTNK QVTFKFKYHG GTNFGRTSGG PYITTSYDYD APLDEYGNIR
301: QPKYGHLKDL HDLIRSMEKI LVHGKYNDTS YGKNAIFVDR DVKVTLSGGT HLVPAWSVSI LPDCKTVAYN TAKIKTQTSV MVKKANSVEK EPEALRWSWM
401: PENLKPFMTD HRDSFRHSQL LEQITTSTDQ SDYLWYRTSL EHKGEGSYTL YVNTSGHEMA KLLGRWSVRL PAPVSGEAPL RKELRFSPQR HSRTQGTSCA
501: SIDQLVPSLF TIAQRHWSLL WRILISSELL LFLLTSS

Best Arabidopsis Sequence Match ( AT1G31740.1 )
(BLAST)

001: MVSLSFILCC VLVSSCAYAT IVSHDGRAIT IDGHRRVLLS GSIHYPRSTT EMWPDLIKKG KEGSLDAIET YVFWNAHEPT RRQYDFSGNL DLIRFLKTIQ
101: NEGMYGVLRI GPYVCAEWNY GGFPVWLHNM PGMEFRTTNT AFMNEMQNFT TMIVEMVKKE KLFASQGGPI ILAQIENEYG NVIGSYGEAG KAYIQWCANM
201: ANSLDVGVPW IMCQQDDAPQ PMLNTCNGYY CDNFSPNNPN TPKMWTENWT GWYKNWGGKD PHRTTEDVAF AVARFFQKEG TFQNYYMYHG GTNFDRTAGG
301: PYITTTYDYD APLDEFGNLN QPKYGHLKQL HDVLHAMEKT LTYGNISTVD FGNLVTATVY QTEEGSSCFI GNVNETSDAK INFQGTSYDV PAWSVSILPD
401: CKTETYNTAK INTQTSVMVK KANEAENEPS TLKWSWRPEN IDSVLLKGKG ESTMRQLFDQ KVVSNDESDY LWYMTTVNLK EQDPVLGKNM SLRINSTAHV
501: LHAFVNGQHI GNYRVENGKF HYVFEQDAKF NPGANVITLL SITVGLPNYG AFFENFSAGI TGPVFIIGRN GDETIVKDLS THKWSYKTGL SGFENQLFSS
601: ESPSTWSAPL GSEPVVVDLL GLGKGTAWIN GNNIGRYWPA FLSDIDGCSA EYHVPRSFLN SEGDNTLVLF EEIGGNPSLV NFQTIGVGSV CANVYEKNVL
701: ELSCNGKPIS AIKFASFGNP GGDCGSFEKG TCEASNNAAA ILTQECVGKE KCSIDVSEDK FGAAECGALA KRLAVEAIC

Arabidopsis Description

BGAL15Beta-galactosidase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6W4]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.