Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020667_P001 | Maize | nucleus | 26.35 | 84.21 |
| OQU78405 | Sorghum | nucleus | 82.12 | 81.92 |
| Zm00001d051562_P001 | Maize | plastid | 74.35 | 71.66 |
| Zm00001d017768_P006 | Maize | cytosol | 75.29 | 67.37 |
| Os02t0704600-01 | Rice | nucleus | 69.41 | 64.69 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 64.71 | 60.84 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 64.24 | 60.8 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 64.71 | 60.57 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 64.47 | 59.83 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 43.53 | 44.47 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 40.24 | 43.4 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 40.71 | 42.2 |
| Bra037167.1-P | Field mustard | mitochondrion | 19.76 | 39.81 |
| Bra036850.1-P | Field mustard | plastid | 36.47 | 37.35 |
| CDX73773 | Canola | cytosol | 36.0 | 37.14 |
| CDX77962 | Canola | nucleus, plastid | 36.0 | 36.87 |
| CDX90677 | Canola | nucleus | 34.12 | 35.54 |
| Bra012880.1-P | Field mustard | nucleus | 33.65 | 35.05 |
| CDY28989 | Canola | nucleus | 34.12 | 34.61 |
| KRH08190 | Soybean | nucleus | 34.82 | 33.95 |
| AT3G50910.1 | Thale cress | cytosol | 35.29 | 33.56 |
| CDY18608 | Canola | nucleus | 27.06 | 31.68 |
| KRH76747 | Soybean | plastid | 32.0 | 31.19 |
| KRH28715 | Soybean | cytosol | 29.41 | 30.49 |
| Solyc02g085000.2.1 | Tomato | nucleus | 32.94 | 30.3 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 35.29 | 30.12 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 33.18 | 29.31 |
| AT5G66480.1 | Thale cress | plastid | 29.65 | 28.38 |
| CDY67893 | Canola | nucleus | 20.71 | 25.51 |
| KRH69884 | Soybean | nucleus | 32.71 | 19.2 |
Protein Annotations
| EMBL:BT064792 | EnsemblPlants:Zm00001d038964_P001 | EnsemblPlants:Zm00001d038964_T001 | EnsemblPlantsGene:Zm00001d038964 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR35490 | ProteinID:AQK88316.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000194B332 | UniProt:C0P923 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr6:-:167834181..167838452
Molecular Weight (calculated)
46806.2 Da
IEP (calculated)
5.040
GRAVY (calculated)
-0.513
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSITHYVLD RLLETRSPVH VQKVVPKPPP PPPDKATPVP VSTARTRSSL ASLYATPENT TLPDLPSSFP GTWSPYLINH KRRGASLART FSQGDAGREV
101: SQPNLPVMLP ALPRGCEPTQ VQEPEFVFQQ AGNGQAEGES AVEEALNGKS VMLQKGKGSV IAEIEQEQPE FEFCQSLEAL VKPVNVRRPL NGEAPKICES
201: DTFEWRKPSS PLGTSVGTPG AEFYDAFEEI SSDGGTRSSR GMDDDLREMR LSLLMEIERR TQTEEALEIW QQEWKNLSHH LSLVALSLPS PSIAEDSDCL
301: KVDPGAELCQ QITVSQLVAA AIARGFARAE VESEMETMIA TKNFEIGRLS DRVQYYEAAN REMSQRNQEA IEMSRQQRKG RKKRQKWFWA SVGLAVTLGA
401: TAIAWSYVTP SQPQASADPS SAASQ
101: SQPNLPVMLP ALPRGCEPTQ VQEPEFVFQQ AGNGQAEGES AVEEALNGKS VMLQKGKGSV IAEIEQEQPE FEFCQSLEAL VKPVNVRRPL NGEAPKICES
201: DTFEWRKPSS PLGTSVGTPG AEFYDAFEEI SSDGGTRSSR GMDDDLREMR LSLLMEIERR TQTEEALEIW QQEWKNLSHH LSLVALSLPS PSIAEDSDCL
301: KVDPGAELCQ QITVSQLVAA AIARGFARAE VESEMETMIA TKNFEIGRLS DRVQYYEAAN REMSQRNQEA IEMSRQQRKG RKKRQKWFWA SVGLAVTLGA
401: TAIAWSYVTP SQPQASADPS SAASQ
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.