Factsheet for Bra037167.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005866.1-P
Bra006653.1-P
Bra012143.1-P
Bra012879.1-P
Bra036849.1-P
Bra040545.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G66480.1	Bra040545.1-P	AT3G01660.1	21798944
AT5G66480.1	Bra006653.1-P	AT3G50920.1	21798944
AT5G66480.1	Bra012879.1-P	AT3G50920.1	21798944
AT5G66480.1	Bra036849.1-P	AT3G50920.1	21798944
AT5G66480.1	Bra005866.1-P	AT5G05760.1	21798944
AT5G66480.1	Bra012143.1-P	AT5G67210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18608	Canola	nucleus	77.25	44.9
Zm00001d020667_P001	Maize	nucleus	24.17	38.35
Bra012880.1-P	Field mustard	nucleus	56.4	29.17
Bra036850.1-P	Field mustard	plastid	57.35	29.16
AT5G66480.1	Thale cress	plastid	59.24	28.15
GSMUA_Achr6P08980_001	Banana	nucleus	43.6	22.44
KRH08190	Soybean	nucleus	45.97	22.25
KRH28715	Soybean	cytosol	43.13	22.2
GSMUA_Achr2P22980_001	Banana	cytosol, nucleus, peroxisome, plastid	43.13	21.88
OQU78405	Sorghum	nucleus	42.18	20.89
Solyc02g085000.2.1	Tomato	nucleus	45.5	20.78
KRH76747	Soybean	plastid	42.65	20.64
GSMUA_Achr1P12060_001	Banana	plastid	37.91	20.3
PGSC0003DMT400009054	Potato	nucleus, plastid	45.97	20.17
OQU85551	Sorghum	cytosol, plastid	43.13	20.09
Zm00001d038964_P001	Maize	nucleus	39.81	19.76
Os02t0704600-01	Rice	nucleus	42.65	19.74
Zm00001d051562_P001	Maize	plastid	41.23	19.73
VIT_04s0023g02110.t01	Wine grape	endoplasmic reticulum	45.5	19.28
TraesCS6A01G272000.1	Wheat	nucleus	40.76	19.03
HORVU6Hr1G068770.1	Barley	nucleus	40.76	18.94
TraesCS6D01G252200.1	Wheat	nucleus	40.28	18.93
Zm00001d017768_P006	Maize	cytosol	42.18	18.74
TraesCS6B01G299600.1	Wheat	nucleus	40.28	18.56
KRH69884	Soybean	nucleus	43.13	12.57

Protein Annotations

EnsemblPlants:Bra037167.1	EnsemblPlants:Bra037167.1-P	EnsemblPlantsGene:Bra037167	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR35490	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002541C9F	UniProt:M4F7V6
MapMan:35.2	:	:	:	:	:

Description

AT5G66480 (E=2e-026) | unknown protein

Coordinates

chrA09:-:4171443..4172348

Molecular Weight (calculated)

24197.9 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.650

Length

211 amino acids

Sequence
(BLAST)

001: MPLLKRSHFL IPRIPPLHLP ISSATKHADL LLFSHNLSSS GGEFYDARDE LSTDSGTPSS VNNMEAELRL SLLMESEKRR QAEETLEEMQ VHWRRLRQQL
101: AHVEFTRFVS DSLDIELAKA EVEMEMTSEL EAKKFEITQL SNRLHYSETV NQEMSQRNQE AIEDARREKK KKRKRRQRWI CGSIAVSITL GGAVLAYPSG
201: NSLKPQPSPI K

Best Arabidopsis Sequence Match ( AT5G66480.1 )
(BLAST)

001: MPTFSAAALG RSLNSGTSLS SKFPSTLQSK PSILNDESKQ PKEKTFTRPQ MSPSLYATTK EIPHPNSPSS YPPSPYIINH KARGPVLFNR DSEVDGPSHP
101: ITSGEEKISG NVDVEATASL SKSTSLSFPI TEAIAVDHTN GVHTQGIHER PVWDCSPPLG TFLNEKSGRD ISNGGIGSNN ATSNLEWQSY LLEPVRIKAD
201: KELEPENFYN PGELVSFTSN TEVEDFERAE SSHSLATHVG EFYDACDELS TDSGMQSSAN NIESEVREMR LGLLMEIERR RQAEATLEQM QVHWRRLRDQ
301: LADVGMFLPL DPTRSQYSMN LADELRCQLE VTRFVSDTLG SDLAKTEVEM EMEAELEAKN FEITRLSDRL HYYETVNQEM SQRNQEAIEV ARRDGQKRKR
401: RQRWIWGSIA ATITLGSGVL AWSYLPPGML SSDEAQPQLS PKDS

Arabidopsis Description

Bacteriophage N4 adsorption B protein [Source:UniProtKB/TrEMBL;Acc:Q93ZY1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.