Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G272000.1 | Wheat | nucleus | 97.33 | 96.68 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 97.77 | 95.85 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 94.65 | 93.61 |
| Zm00001d020667_P001 | Maize | nucleus | 23.61 | 79.7 |
| Os02t0704600-01 | Rice | nucleus | 73.27 | 72.15 |
| OQU85551 | Sorghum | cytosol, plastid | 67.93 | 67.33 |
| OQU78405 | Sorghum | nucleus | 62.36 | 65.73 |
| Zm00001d038964_P001 | Maize | nucleus | 60.8 | 64.24 |
| Zm00001d051562_P001 | Maize | plastid | 61.69 | 62.81 |
| Zm00001d017768_P006 | Maize | cytosol | 65.48 | 61.89 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 43.21 | 46.63 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 42.54 | 46.59 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 40.31 | 45.94 |
| CDX73773 | Canola | cytosol | 37.19 | 40.53 |
| Bra037167.1-P | Field mustard | mitochondrion | 18.93 | 40.28 |
| Bra036850.1-P | Field mustard | plastid | 36.53 | 39.52 |
| CDX77962 | Canola | nucleus, plastid | 36.3 | 39.28 |
| CDX90677 | Canola | nucleus | 35.63 | 39.22 |
| CDY28989 | Canola | nucleus | 36.3 | 38.9 |
| KRH08190 | Soybean | nucleus | 37.64 | 38.76 |
| Bra012880.1-P | Field mustard | nucleus | 35.19 | 38.73 |
| AT3G50910.1 | Thale cress | cytosol | 36.97 | 37.14 |
| KRH76747 | Soybean | plastid | 34.97 | 36.01 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 39.42 | 35.54 |
| CDY18608 | Canola | nucleus | 28.51 | 35.26 |
| KRH28715 | Soybean | cytosol | 30.96 | 33.9 |
| Solyc02g085000.2.1 | Tomato | nucleus | 34.74 | 33.77 |
| AT5G66480.1 | Thale cress | plastid | 32.74 | 33.11 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 34.3 | 32.02 |
| CDY67893 | Canola | nucleus | 22.94 | 29.86 |
| KRH69884 | Soybean | nucleus | 35.63 | 22.1 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G252200.1 | EnsemblPlantsGene:TraesCS6D01G252200 | ncoils:Coil | PANTHER:PTHR35490 | SEG:seg | TMHMM:TMhelix |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:356283556..356286252
Molecular Weight (calculated)
49207.1 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.653
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTITHYVLD PFLETGSLPN LQKLVPKPPP AALLPPEKSS EKPIPVPVAP ARTSTLPALY STPESTPLPD SPSSFPGTWS PYVINHKRRG PGLIKTSSQG
101: DVGSEGSLPK FPEGLPALPK RSEAFQVQES EFRFSQESDG VVNNGVKETL DGGVQKGKVT LFGQDEQDQP EFEFRHESPD ALMRPVNVAR LVNNGMPRNG
201: ENDAFLEPQD SQSVTSNSEA EDAGGQGWWK PSSPYGTSAG TPGAEFYDAF EEISSDGATR SSRCIDDEYR EMRLSMLTEI EGRKQAEEVA ETWQKEWKKL
301: SHHLSLIALS LPSPTVAEND DDTSADPGAE LCQQITVSQL VAAAIARGIA RVEVESEMES VISAKNFEIA RLSDRVQYYE AANREMSQRN QEAIEMSRQQ
401: RNKRKMRQKW FWGSVGIAVT LGTAAIAWSY MPASQSQAGD SNSTNTNSD
101: DVGSEGSLPK FPEGLPALPK RSEAFQVQES EFRFSQESDG VVNNGVKETL DGGVQKGKVT LFGQDEQDQP EFEFRHESPD ALMRPVNVAR LVNNGMPRNG
201: ENDAFLEPQD SQSVTSNSEA EDAGGQGWWK PSSPYGTSAG TPGAEFYDAF EEISSDGATR SSRCIDDEYR EMRLSMLTEI EGRKQAEEVA ETWQKEWKKL
301: SHHLSLIALS LPSPTVAEND DDTSADPGAE LCQQITVSQL VAAAIARGIA RVEVESEMES VISAKNFEIA RLSDRVQYYE AANREMSQRN QEAIEMSRQQ
401: RNKRKMRQKW FWGSVGIAVT LGTAAIAWSY MPASQSQAGD SNSTNTNSD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.