Factsheet for TraesCS6A01G271900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G346800.3
TraesCS1B01G360800.1
TraesCS1D01G349700.1
TraesCS2A01G368500.1
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS3A01G151200.1
TraesCS3A01G278800.1
TraesCS3B01G178100.1
TraesCS3B01G313000.1
TraesCS3D01G159100.1
TraesCS3D01G279100.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7A01G341800.1
TraesCS7B01G241100.1
TraesCS7D01G296400.1
TraesCS7D01G337800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT3G50920.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT3G50920.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT3G50920.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT3G50920.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT3G50920.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT3G50920.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT3G50920.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT3G50920.1	TraesCS1A01G346800.3	AT5G41600.1	21798944
AT3G50920.1	TraesCS1B01G360800.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS1D01G349700.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS3A01G151200.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS3A01G278800.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS3B01G178100.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS3B01G313000.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS3D01G159100.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS3D01G279100.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS7A01G341800.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS7B01G241100.1	AT5G41600.1	21798944
AT3G50920.1	TraesCS7D01G337800.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G299500.1	Wheat	plastid	92.65	92.65
TraesCS6D01G252100.1	Wheat	plastid	92.28	91.94
HORVU6Hr1G068790.1	Barley	mitochondrion	85.66	85.98
TraesCS6A01G271800.1	Wheat	plastid	84.19	83.88
OQU85552	Sorghum	plastid	65.81	65.33
Zm00001d017767_P001	Maize	plastid	63.24	61.65
Os02t0704500-01	Rice	plastid	61.03	60.36
Zm00001d051561_P001	Maize	plastid	60.29	52.23
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	41.54	49.78
VIT_04s0023g02150.t01	Wine grape	plasma membrane	38.6	46.88
Bra005332.1-P	Field mustard	extracellular	13.24	46.15
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	36.4	45.83
Bra028216.1-P	Field mustard	extracellular	13.24	45.57
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.09	40.72
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.35	40.37
Bra006653.1-P	Field mustard	extracellular, plasma membrane	14.34	39.8
Solyc02g062580.2.1	Tomato	plasma membrane	37.5	38.49
PGSC0003DMT400040097	Potato	plastid	36.76	37.74
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	37.5	37.09
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	29.78	36.49
CDY45229	Canola	plastid	34.93	35.71
KRH76744	Soybean	plastid	37.13	35.31
KRH28718	Soybean	plastid	37.5	35.29
AT3G50920.1	Thale cress	plastid	36.03	35.13
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	28.68	34.82
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	16.91	34.33
CDY50985	Canola	plastid	34.93	33.93
CDX73772	Canola	mitochondrion, plastid	30.51	33.07
CDY65309	Canola	plastid	33.46	32.5
CDY28990	Canola	plasma membrane	25.74	31.96
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	36.03	31.72
CDX77963	Canola	cytosol, golgi, peroxisome	24.26	28.21
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	24.26	28.21
CDY34432	Canola	cytosol, plasma membrane, plastid	14.71	27.97
AT5G66450.3	Thale cress	plastid	30.15	26.62
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	13.97	26.57
CDX90676	Canola	golgi, peroxisome, plasma membrane	30.15	17.86
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	30.15	17.86

Protein Annotations

EnsemblPlants:TraesCS6A01G271900.1	EnsemblPlantsGene:TraesCS6A01G271900	Gene3D:1.20.144.10	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	PANTHER:PTHR11247
PANTHER:PTHR11247:SF25	PFAM:PF01569	SEG:seg	SMART:SM00014	SUPFAM:SSF48317	TIGR:cd03382
TMHMM:TMhelix	MapMan:5.2.2.4	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:498946762..498949106

Molecular Weight (calculated)

29964.9 Da

IEP (calculated)

10.843

GRAVY (calculated)

0.300

Length

272 amino acids

Sequence
(BLAST)

001: MLLSPPTPWP RVKPVRLNRL PQCKDRLLSL PRGRRPRAPR RLGVCMAEMA WVGSESPREL GVSDGEGDAM LGGDKLPGPR AEAAATRWTP VEAALNRMSK
101: WLVAVSFALA ALWKRDAEIM WALMGAVANT VLSSILKKLL NHERPAPALR SDPGMPSSHA QSIFYAATFL VLSVFSWLGT NYLAMILGAT TVALASYLSW
201: LRVSQRLHTL NQILVGAAVG SAFSALWFAL WHLLVREAFA SSLWVQIPVV LGSVVFSVSF VVYIIQHWLK DE

Best Arabidopsis Sequence Match ( AT5G66450.2 )
(BLAST)

001: MADLVKTNAR RDGEDRFQAL EQEAFISNSS SELQNELVSD AGDGIEAIAN RLSKWIVAAL FGSVLLLRHD GAALWAVIGS VSNSVLSVAL KRILNQERPV
101: ATLRSDPGMP SSHAQSISFI SVFSVFSVME WLGTNVLSLF LSGFILALGS YFTWLRVSQK LHTTSQVVVG AIVGSVYSTL WYVTWNSLVL EAFTSTFSVQ
201: IALFLVAAAS ALGFAVYVLL NWFKDDR

Arabidopsis Description

Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.