CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89811
EES12559
EES14570
EES19841
KXG31128
KXG31516
KXG33320
OQU84758

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	EES12559	AT3G60600.1	21798944
AT3G50920.1	EES14570	AT3G60600.1	21798944
AT3G50920.1	KXG31128	AT3G60600.1	21798944
AT3G50920.1	EER89811	AT5G41600.1	21798944
AT3G50920.1	EES19841	AT5G41600.1	21798944
AT3G50920.1	KXG31516	AT5G41600.1	21798944
AT3G50920.1	KXG33320	AT5G41600.1	21798944
AT3G50920.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017767_P001	Maize	plastid	86.13	84.59
Zm00001d051561_P001	Maize	plastid	85.04	74.2
TraesCS6D01G252100.1	Wheat	plastid	65.69	65.93
TraesCS6A01G271900.1	Wheat	mitochondrion	65.33	65.81
TraesCS6B01G299500.1	Wheat	plastid	64.6	65.07
HORVU6Hr1G068790.1	Barley	mitochondrion	63.14	63.84
TraesCS6B01G299400.1	Wheat	plastid	62.04	63.67
TraesCS6A01G271800.1	Wheat	plastid	61.68	61.9
Os02t0704500-01	Rice	plastid	56.93	56.73
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	39.42	47.58
Bra005332.1-P	Field mustard	extracellular	12.77	44.87
Bra028216.1-P	Field mustard	extracellular	12.77	44.3
VIT_04s0023g02150.t01	Wine grape	plasma membrane	35.77	43.75
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	33.94	43.06
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	32.12	39.82
PGSC0003DMT400040097	Potato	plastid	37.59	38.87
Bra006653.1-P	Field mustard	extracellular, plasma membrane	13.87	38.78
Solyc02g062580.2.1	Tomato	plasma membrane	37.23	38.49
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	29.93	37.61
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	29.2	35.71
AT3G50920.1	Thale cress	plastid	35.4	34.77
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	28.1	34.68
KRH28718	Soybean	plastid	36.5	34.6
CDY45229	Canola	plastid	33.58	34.59
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	34.31	34.18
KRH76744	Soybean	plastid	35.4	33.92
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	16.06	32.84
CDY28990	Canola	plasma membrane	25.91	32.42
CDY50985	Canola	plastid	32.85	32.14
CDX73772	Canola	mitochondrion, plastid	29.2	31.87
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	35.04	31.07
CDY65309	Canola	plastid	31.02	30.36
CDY34432	Canola	cytosol, plasma membrane, plastid	14.6	27.97
CDX77963	Canola	cytosol, golgi, peroxisome	23.72	27.78
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	23.72	27.78
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	14.23	27.27
AT5G66450.3	Thale cress	plastid	26.64	23.7
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	30.66	18.3
CDX90676	Canola	golgi, peroxisome, plasma membrane	29.93	17.86

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.4	EntrezGene:8073862	UniProt:C5Y0C2	ProteinID:EES07399.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629
GO:GO:0006651	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787
EnsemblPlants:OQU85552	ProteinID:OQU85552	ProteinID:OQU85552.1	PFAM:PF01569	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	EnsemblPlantsGene:SORBI_3004G268300	SUPFAM:SSF48317	unigene:Sbi.3590
TMHMM:TMhelix	UniParc:UPI0001A85C37	RefSeq:XP_002454423.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:61221831..61225326

Molecular Weight (calculated)

30410.4 Da

IEP (calculated)

10.026

GRAVY (calculated)

0.293

Length

274 amino acids

Sequence
(BLAST)

001: MPCLLLLAPP PPPPPRPCLI DSVSRPPLPK YRFFLPRTRR RPSPWLGVRM AEMTRVGSGG EPPEVGVSME SDPLVGGDAP SRPRWEASRW ASVEAALNRM
101: SKWLVSGSFA FAAIWKHDAE IMWVLLGAVG NSLLSLVLKK MLNHERPAPA LRSDPGMPSS HAQSIFYATT ILALSLYYWL GTNYLTMILG PATLLVAAYL
201: SWLRVSQRLH TLNQVTVGAV VGSAFGALWF VLWHWLVQEA FASSLLVRIA VILGSTTFCV SFVIYIIHHW LKDE

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.