Factsheet for Solyc02g062580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 5
extracellular 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	plastid
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc06g074170.2.1
Solyc08g081730.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT3G50920.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT3G50920.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT3G50920.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT3G50920.1	Solyc08g081730.2.1	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040097	Potato	plastid	91.7	91.7
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	57.36	70.37
VIT_04s0023g02150.t01	Wine grape	plasma membrane	48.68	57.59
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	53.58	51.64
Bra006653.1-P	Field mustard	extracellular, plasma membrane	17.74	47.96
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	40.75	47.58
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	38.87	46.61
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.23	44.04
KRH76744	Soybean	plastid	46.79	43.36
KRH28718	Soybean	plastid	47.17	43.25
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	34.72	41.07
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.34	40.99
CDY45229	Canola	plastid	41.13	40.98
Bra005332.1-P	Field mustard	extracellular	11.32	38.46
CDY28990	Canola	plasma membrane	31.7	38.36
TraesCS6B01G299500.1	Wheat	plastid	39.25	38.24
Bra028216.1-P	Field mustard	extracellular	11.32	37.97
TraesCS6A01G271900.1	Wheat	mitochondrion	38.49	37.5
AT3G50920.1	Thale cress	plastid	39.25	37.28
OQU85552	Sorghum	plastid	38.49	37.23
CDY50985	Canola	plastid	39.25	37.14
TraesCS6D01G252100.1	Wheat	plastid	38.11	37.0
TraesCS6A01G271800.1	Wheat	plastid	38.11	37.0
CDY65309	Canola	plastid	38.49	36.43
HORVU6Hr1G068790.1	Barley	mitochondrion	36.98	36.16
TraesCS6B01G299400.1	Wheat	plastid	35.85	35.58
Zm00001d017767_P001	Maize	plastid	37.36	35.48
CDX73772	Canola	mitochondrion, plastid	33.58	35.46
Os02t0704500-01	Rice	plastid	36.23	34.91
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	18.49	34.27
CDY34432	Canola	cytosol, plasma membrane, plastid	17.74	32.87
AT5G66450.3	Thale cress	plastid	36.6	31.49
Zm00001d051561_P001	Maize	plastid	35.85	30.25
CDX77963	Canola	cytosol, golgi, peroxisome	22.26	25.21
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	22.26	25.21
CDX90676	Canola	golgi, peroxisome, plasma membrane	34.72	20.04
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	34.34	19.83

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006651	GO:GO:0008150	GO:GO:0008152
GO:GO:0008195	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	UniProt:K4B6E6	PFAM:PF01569	PANTHER:PTHR11247
PANTHER:PTHR11247:SF25	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SUPFAM:SSF48317	EnsemblPlantsGene:Solyc02g062580.2	EnsemblPlants:Solyc02g062580.2.1
TMHMM:TMhelix	UniParc:UPI000276827D	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:34301955..34305572

Molecular Weight (calculated)

29527.8 Da

IEP (calculated)

9.124

GRAVY (calculated)

0.590

Length

265 amino acids

Sequence
(BLAST)

001: MSTATALVIS PFLRFPKIFN SKLDFRRKFA SFSLYTRHKS FPLTIARVRA AAEDEVMGVS LEKEEAFVDG SSSSASAGLN ATFNSLSKWL VAALFGIIFL
101: WRHDAEALWA ASGSVLNSAL STVLKRILNQ ERPVSTIRSD PGMPSSHAQS IFYTVTFCIV SMVECFGFNS ITAVVSALIF ALGSYFSWLR VSQQFHTTSQ
201: VTVGAALGFS FSIFWFWLWD AIVLAAFISH LWVRIVVVLG SAAICASFLL YVIRYWVLEE INLYY

Best Arabidopsis Sequence Match ( AT5G66450.4 )
(BLAST)

001: MAASSSSLLL LHKPTYNFHF AASSVPTYIN SARFRISSSI FPLDRRRRRR IWSVSGFKSM ADLVKTNARR DGEDRFQALE QEAFISNSSS ELQNELVSDA
101: GDGIEAIANR LSKWIVAALF GSVLLLRHDG AALWAVIGSV SNSVLSVALK RILNQERPVA TLRSDPGMPS SHAQSISFIS VFSVFSVMEW LGTNVLSLFL
201: SGFILALGSY FTWLRVSQKL HTTSQVVVGA IVGSVYSTLW YVTWNSLVLE AFTSTFSVQI ALFLVAAASA LGFAVYVLLN WFKDDR

Arabidopsis Description

Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.