CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, cytosol

Predictor Summary:

plastid 1
golgi 1
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, golgi
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
MultiLoc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX78905
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	CDX67837	AT3G60600.1	21798944
AT3G50920.1	CDX71796	AT3G60600.1	21798944
AT3G50920.1	CDX89063	AT3G60600.1	21798944
AT3G50920.1	CDY41153	AT3G60600.1	21798944
AT3G50920.1	CDY48365	AT3G60600.1	21798944
AT3G50920.1	CDX78905	AT4G19030.1	21798944
AT3G50920.1	CDX98596	AT4G19030.1	21798944
AT3G50920.1	CDX99411	AT4G19030.1	21798944
AT3G50920.1	CDY01565	AT4G19030.1	21798944
AT3G50920.1	CDX70995	AT5G22290.1	21798944
AT3G50920.1	CDX88803	AT5G22290.1	21798944
AT3G50920.1	CDX92368	AT5G22290.1	21798944
AT3G50920.1	CDY09128	AT5G22290.1	21798944
AT3G50920.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34432	Canola	cytosol, plasma membrane, plastid	79.02	79.02
Bra006653.1-P	Field mustard	extracellular, plasma membrane	51.75	75.51
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	53.15	33.93
AT3G50920.1	Thale cress	plastid	53.85	27.6
CDX73772	Canola	mitochondrion, plastid	47.55	27.09
CDY45229	Canola	plastid	44.76	24.06
CDY50985	Canola	plastid	44.76	22.86
CDY65309	Canola	plastid	43.36	22.14
VIT_04s0023g02150.t01	Wine grape	plasma membrane	34.27	21.88
CDY28990	Canola	plasma membrane	32.87	21.46
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	29.37	19.44
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	30.77	19.38
Solyc02g062580.2.1	Tomato	plasma membrane	34.27	18.49
KRH76744	Soybean	plastid	35.66	17.83
PGSC0003DMT400040097	Potato	plastid	32.87	17.74
KRH28718	Soybean	plastid	34.97	17.3
CDX77963	Canola	cytosol, golgi, peroxisome	25.87	15.81
TraesCS6A01G271800.1	Wheat	plastid	29.37	15.38
TraesCS6B01G299400.1	Wheat	plastid	28.67	15.36
HORVU6Hr1G068790.1	Barley	mitochondrion	28.67	15.13
CDX90676	Canola	golgi, peroxisome, plasma membrane	47.55	14.81
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	27.97	14.55
TraesCS6B01G299500.1	Wheat	plastid	27.27	14.34
TraesCS6D01G252100.1	Wheat	plastid	27.27	14.29
OQU85552	Sorghum	plastid	27.27	14.23
TraesCS6A01G271900.1	Wheat	mitochondrion	26.57	13.97
Zm00001d017767_P001	Maize	plastid	25.87	13.26
Os02t0704500-01	Rice	plastid	25.17	13.09
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	27.27	12.62
Zm00001d051561_P001	Maize	plastid	25.17	11.46
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	9.79	10.45

Protein Annotations

EnsemblPlants:CDY52388	EnsemblPlantsGene:GSBRNA2T00006832001	GO:A0A078ITK1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:P_Acid_Pase_2/haloperoxi_sf	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	ProteinID:CDY52388	ProteinID:CDY52388.1	SUPFAM:SSF48317
TMHMM:TMhelix	UniParc:UPI0004EF01A4	UniProt:A0A078ITK1	MapMan:5.2.2.4	:	:

Description

BnaCnng22260DBnaCnng22260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITK1]

Coordinates

chrLK033082:+:62529..64547

Molecular Weight (calculated)

15928.1 Da

IEP (calculated)

10.903

GRAVY (calculated)

-0.190

Length

143 amino acids

Sequence
(BLAST)

001: MAVLVKKFAR RDGSEQSGSV EQEASINGSP EIRYERVTGR GIEAIVNSLS TWVVSILFAS IILLRRDGTA LWGIIGSVLN SALSVVLKRI LNQARPATTW
101: RPDPEMPSTH AQSISFIFVS SNLNTINRSR KTRDEWETKS REV

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.