Factsheet for PGSC0003DMT400040097

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400032086
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT3G50920.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT3G50920.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT3G50920.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT3G50920.1	PGSC0003DMT400032086	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062580.2.1	Tomato	plasma membrane	91.7	91.7
VIT_04s0023g02150.t01	Wine grape	plasma membrane	49.06	58.04
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	24.53	48.51
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	41.13	48.02
Bra006653.1-P	Field mustard	extracellular, plasma membrane	17.36	46.94
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	54.72	46.93
KRH76744	Soybean	plastid	48.68	45.1
KRH28718	Soybean	plastid	48.68	44.64
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.85	42.99
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	34.34	41.74
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	33.96	40.18
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.21	39.64
CDY45229	Canola	plastid	38.49	38.35
CDY28990	Canola	plasma membrane	31.32	37.9
TraesCS6B01G299500.1	Wheat	plastid	38.87	37.87
OQU85552	Sorghum	plastid	38.87	37.59
Bra005332.1-P	Field mustard	extracellular	10.94	37.18
TraesCS6A01G271800.1	Wheat	plastid	38.11	37.0
TraesCS6A01G271900.1	Wheat	mitochondrion	37.74	36.76
Bra028216.1-P	Field mustard	extracellular	10.94	36.71
TraesCS6D01G252100.1	Wheat	plastid	37.36	36.26
AT3G50920.1	Thale cress	plastid	38.11	36.2
HORVU6Hr1G068790.1	Barley	mitochondrion	36.98	36.16
TraesCS6B01G299400.1	Wheat	plastid	35.85	35.58
Zm00001d017767_P001	Maize	plastid	37.36	35.48
CDY50985	Canola	plastid	37.36	35.36
Os02t0704500-01	Rice	plastid	36.6	35.27
CDY65309	Canola	plastid	36.6	34.64
CDX73772	Canola	mitochondrion, plastid	32.45	34.26
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	17.74	32.87
CDY34432	Canola	cytosol, plasma membrane, plastid	16.6	30.77
Zm00001d051561_P001	Maize	plastid	35.85	30.25
AT5G66450.3	Thale cress	plastid	34.34	29.55
CDX77963	Canola	cytosol, golgi, peroxisome	22.26	25.21
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	22.26	25.21
CDX90676	Canola	golgi, peroxisome, plasma membrane	34.34	19.83
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	33.96	19.61

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:102593568	EntrezGene:102593886	MapMan:5.2.2.4	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	UniProt:M1B9A7	PFAM:PF01569	EnsemblPlantsGene:PGSC0003DMG400015511	PGSC:PGSC0003DMG400015511	EnsemblPlants:PGSC0003DMT400040097
PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SUPFAM:SSF48317	TMHMM:TMhelix
UniParc:UPI0002949046	RefSeq:XP_006346967.1	SEG:seg	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015511]

Coordinates

chr2:+:20817991..20821796

Molecular Weight (calculated)

29513.6 Da

IEP (calculated)

9.022

GRAVY (calculated)

0.497

Length

265 amino acids

Sequence
(BLAST)

001: MSTATALVIS PFLRFPKFSN SKLDFRRKFA SFSLYTRHKS SPLTIAKFRT TAEDEAMGVS FEKEEVFVDG SSSSASAGLN ATLNSLSKWL VAALFGIIFL
101: WRHDAEALWA ASGSVLNSGL STVLKRILNQ ERPVSTIRSD PGMPSSHAQS IFYTVTFCIV SMVEYFGLNG ITAVISALIF GIGSYLSWLR VSQQFHTSSQ
201: VTVGAALGFS FSIFWFWLWD AIVLDAFISH LWVRIVVVLG TAAICASFLL YVIRYWVLEE INLYY

Best Arabidopsis Sequence Match ( AT3G50920.1 )
(BLAST)

001: MAASSSLLLL LHCPTCNFYF DSSSYLKRSR LSSYSSIISR GSPLFVSSFG SMTVKRFSSR VGSRSNDGNE QFGALEQESF INNSSEIRKD LVTGGGIEAI
101: VNRLSKWVVS VLFGSIILLR HDGAALWAVI GSISNSALSV VLKRILNQER PTTTLRSDPG MPSSHAQSIS FISVFAVLSV MEWLGTNGVS LFLSGLILAL
201: GSYFIRLRVS QKLHTSSQVV VGAIVGSLFC ILWYTMWNSL LREAFEASLL VQISVFLFAA TFALAFAAYV VLNWFKDER

Arabidopsis Description

LPPE1Lipid phosphate phosphatase epsilon 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J220]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.