Factsheet for Zm00001d051561_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008982_P001
Zm00001d012776_P001
Zm00001d016041_P001
Zm00001d017390_P001
Zm00001d020229_P001
Zm00001d020729_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d037453_P001
Zm00001d038768_P001
Zm00001d039316_P001
Zm00001d043551_P003
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50920.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT3G50920.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT3G50920.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT3G50920.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT3G50920.1	Zm00001d051288_P001	AT3G60600.1	21798944
AT3G50920.1	Zm00001d008982_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d012776_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d016041_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d020229_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d020729_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d037453_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d038768_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d039316_P001	AT5G41600.1	21798944
AT3G50920.1	Zm00001d043551_P003	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85552	Sorghum	plastid	74.2	85.04
Zm00001d017767_P001	Maize	plastid	73.57	82.8
TraesCS6D01G252100.1	Wheat	plastid	52.55	60.44
TraesCS6A01G271900.1	Wheat	mitochondrion	52.23	60.29
TraesCS6B01G299500.1	Wheat	plastid	51.59	59.56
HORVU6Hr1G068790.1	Barley	mitochondrion	49.36	57.2
TraesCS6B01G299400.1	Wheat	plastid	48.41	56.93
TraesCS6A01G271800.1	Wheat	plastid	49.36	56.78
Os02t0704500-01	Rice	plastid	46.82	53.45
Bra005332.1-P	Field mustard	extracellular	11.78	47.44
Bra028216.1-P	Field mustard	extracellular	11.78	46.84
GSMUA_Achr10P...	Banana	cytosol, peroxisome, plasma membrane	31.53	43.61
VIT_04s0023g02150.t01	Wine grape	plasma membrane	29.3	41.07
Solyc02g062570.2.1	Tomato	golgi, plasma membrane, vacuole	26.75	38.89
Bra012072.1-P	Field mustard	cytosol, peroxisome, plasma membrane	26.75	38.01
Bra037170.1-P	Field mustard	cytosol, peroxisome, plasma membrane	25.48	36.7
Solyc02g062580.2.1	Tomato	plasma membrane	30.25	35.85
PGSC0003DMT400040097	Potato	plastid	30.25	35.85
Bra031812.1-P	Field mustard	cytosol, peroxisome, plasma membrane	23.89	33.78
Bra006653.1-P	Field mustard	extracellular, plasma membrane	10.51	33.67
CDY45229	Canola	plastid	28.03	33.08
Solyc02g084970.2.1	Tomato	plasma membrane, plastid	28.03	32.0
KRH28718	Soybean	plastid	28.98	31.49
CDY50985	Canola	plastid	28.03	31.43
PGSC0003DMT400009288	Potato	extracellular, plasma membrane, vacuole	13.38	31.34
KRH76744	Soybean	plastid	28.34	31.12
AT3G50920.1	Thale cress	plastid	27.39	30.82
CDY28991	Canola	cytosol, endoplasmic reticulum, peroxisome	21.97	30.8
CDY28990	Canola	plasma membrane	20.7	29.68
CDY65309	Canola	plastid	26.43	29.64
CDX73772	Canola	mitochondrion, plastid	23.25	29.08
PGSC0003DMT400009294	Potato	cytosol, peroxisome, plasma membrane, plastid	28.34	28.8
CDX77963	Canola	cytosol, golgi, peroxisome	19.43	26.07
Bra036849.1-P	Field mustard	cytosol, golgi, peroxisome	19.43	26.07
CDY52388	Canola	cytosol, endoplasmic reticulum, golgi	11.46	25.17
CDY34432	Canola	cytosol, plasma membrane, plastid	11.46	25.17
AT5G66450.3	Thale cress	plastid	21.97	22.4
Bra012879.1-P	Field mustard	golgi, peroxisome, plasma membrane	24.2	16.56
CDX90676	Canola	golgi, peroxisome, plasma membrane	23.57	16.12

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.4	UniProt:A0A1D6Q7Z1	ProteinID:AQK54546.1	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PFAM:PF01569	PANTHER:PTHR11247	PANTHER:PTHR11247:SF25	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase
SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI00084564FF	EnsemblPlantsGene:Zm00001d051561	EnsemblPlants:Zm00001d051561_P001
EnsemblPlants:Zm00001d051561_T001	SEG:seg	:	:	:	:

Description

Lipid phosphate phosphatase epsilon 2 chloroplastic

Coordinates

chr4:+:162767963..162770959

Molecular Weight (calculated)

34865.9 Da

IEP (calculated)

10.556

GRAVY (calculated)

0.126

Length

314 amino acids

Sequence
(BLAST)

001: MPCLLFLLAP PPRPCLADSV SRSPLPNKYR FFLPQTRRRP SPRLGDGVRM AEMTRVWSGG EPLEVGVSME SDPIVGGEAP SRSRWEASRW APVEAALNRM
101: IDSNQGLSRL RNFVAKLKKG CIEPKSLPKG TKAPGYSGSS IYRERPLLYL RKAIWKRDAE IMWVLLGAVG NSLLSLVLKK MLNHERPAPA LRSDPGMPSS
201: HAQSIFYAAT VLALSLYYWL GTNYLTMILG PATLSLAAYL SWLRVSRGLH TLNQVMVGAV VGSAVGALWF VLWHWLVQEA FASSVLVRVA VILGSSAFCV
301: SFVVYMIRHW LKDE

Best Arabidopsis Sequence Match ( AT5G66450.4 )
(BLAST)

001: MAASSSSLLL LHKPTYNFHF AASSVPTYIN SARFRISSSI FPLDRRRRRR IWSVSGFKSM ADLVKTNARR DGEDRFQALE QEAFISNSSS ELQNELVSDA
101: GDGIEAIANR LSKWIVAALF GSVLLLRHDG AALWAVIGSV SNSVLSVALK RILNQERPVA TLRSDPGMPS SHAQSISFIS VFSVFSVMEW LGTNVLSLFL
201: SGFILALGSY FTWLRVSQKL HTTSQVVVGA IVGSVYSTLW YVTWNSLVLE AFTSTFSVQI ALFLVAAASA LGFAVYVLLN WFKDDR

Arabidopsis Description

Phosphatidic acid phosphatase (PAP2) family protein [Source:TAIR;Acc:AT5G66450]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.