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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 1
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, peroxisome, secretory
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d004543_P001
Zm00001d007067_P003
Zm00001d008982_P001
Zm00001d010538_P005
Zm00001d010824_P001
Zm00001d012017_P002
Zm00001d012393_P004
Zm00001d012776_P001
Zm00001d013600_P001
Zm00001d013839_P001
Zm00001d015005_P002
Zm00001d015006_P004
Zm00001d016041_P001
Zm00001d020229_P001
Zm00001d020624_P002
Zm00001d020729_P001
Zm00001d024925_P001
Zm00001d024933_P003
Zm00001d029226_P001
Zm00001d032442_P002
Zm00001d034638_P001
Zm00001d037453_P001
Zm00001d037747_P001
Zm00001d038380_P001
Zm00001d038768_P001
Zm00001d039182_P001
Zm00001d039316_P001
Zm00001d039455_P002
Zm00001d040209_P001
Zm00001d040435_P003
Zm00001d040734_P001
Zm00001d041267_P001
Zm00001d042329_P001
Zm00001d043551_P003
Zm00001d044089_P002
Zm00001d044412_P001
Zm00001d047446_P002
Zm00001d053686_P001
Zm00001d054017_P003

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G11220.1 Zm00001d010824_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d040734_P001 AT1G09330.1 21798944
AT4G11220.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT4G11220.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT4G11220.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d037747_P001 AT1G55190.1 21798944
AT5G41600.1 Zm00001d039455_P002 AT1G55190.1 21798944
AT5G41600.1 Zm00001d040435_P003 AT1G77350.1 21798944
AT5G41600.1 Zm00001d015005_P002 AT2G03120.1 21798944
AT5G41600.1 Zm00001d015006_P004 AT2G03120.1 21798944
AT5G41600.1 Zm00001d054017_P003 AT2G03120.1 21798944
AT5G41600.1 Zm00001d013600_P001 AT2G39960.1 21798944
AT5G41600.1 Zm00001d020624_P002 AT2G39960.1 21798944
AT5G41600.1 Zm00001d024925_P001 AT2G46890.1 21798944
AT5G41600.1 Zm00001d039182_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044089_P002 AT3G02420.1 21798944
AT5G41600.1 Zm00001d044412_P001 AT3G02420.1 21798944
AT5G41600.1 Zm00001d004543_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d007067_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d024933_P003 AT3G07950.1 21798944
AT5G41600.1 Zm00001d029226_P001 AT3G07950.1 21798944
AT5G41600.1 Zm00001d047446_P002 AT3G07950.1 21798944
AT5G41600.1 Zm00001d012017_P002 AT3G27080.1 21798944
AT5G41600.1 Zm00001d040209_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d042329_P001 AT3G27080.1 21798944
AT5G41600.1 Zm00001d010538_P005 AT3G46060.1 21798944
AT5G41600.1 Zm00001d034638_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d038380_P001 AT3G46060.1 21798944
AT5G41600.1 Zm00001d012393_P004 AT3G59500.1 21798944
AT5G41600.1 Zm00001d041267_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d053686_P001 AT3G59500.1 21798944
AT5G41600.1 Zm00001d008982_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d012776_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d016041_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020229_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d020729_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d037453_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d038768_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d039316_P001 AT5G41600.1 21798944
AT5G41600.1 Zm00001d043551_P003 AT5G41600.1 21798944
AT5G41600.1 Zm00001d013839_P001 AT5G53560.1 21798944
AT5G41600.1 Zm00001d032442_P002 AT5G53560.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
OQU84758 Sorghum cytosol, peroxisome, plasma membrane 94.78 93.97
Os02t0265900-01 Rice cytosol, peroxisome, plasma membrane 75.22 75.22
Zm00001d037453_P001 Maize cytosol, peroxisome, plasma membrane 69.13 60.92
KRG99174 Soybean endoplasmic reticulum, plasma membrane 19.13 50.57
VIT_15s0046g01760.t01 Wine grape cytosol, peroxisome, plasma membrane 55.65 50.2
VIT_02s0025g00640.t01 Wine grape cytosol, nucleus, plasma membrane 54.35 49.6
Zm00001d020229_P001 Maize plasma membrane 32.61 49.34
GSMUA_Achr10P... Banana cytosol, endoplasmic reticulum, plasma membrane 53.91 49.21
CDX79993 Canola cytosol, peroxisome, plasma membrane 53.48 49.0
Bra004562.1-P Field mustard cytosol, peroxisome, plasma membrane 53.48 49.0
KRH41254 Soybean cytosol, nucleus, plasma membrane 53.91 48.82
KRH59988 Soybean mitochondrion 53.91 48.82
Solyc03g007740.2.1 Tomato nucleus 53.91 48.63
Zm00001d020729_P001 Maize plasma membrane 20.0 48.42
PGSC0003DMT400000230 Potato cytosol, nucleus, plasma membrane 55.65 48.3
PGSC0003DMT400049928 Potato cytosol, nucleus, plasma membrane 53.48 48.24
PGSC0003DMT400051387 Potato cytosol, nucleus, plasma membrane 53.48 48.24
Solyc06g036430.2.1 Tomato cytosol, nucleus, plasma membrane 53.04 48.22
CDY42012 Canola cytosol, peroxisome, plasma membrane 52.61 48.21
Solyc08g081730.2.1 Tomato endoplasmic reticulum, plastid 56.52 48.15
PGSC0003DMT400032086 Potato cytosol, nucleus, plasma membrane 56.52 48.15
Solyc01g095200.2.1 Tomato plastid 54.78 47.91
PGSC0003DMT400074360 Potato cytosol, nucleus, plasma membrane 52.61 47.83
CDY13240 Canola cytosol, peroxisome, plasma membrane 33.48 47.83
CDY52012 Canola cytosol, peroxisome, plasma membrane 52.61 47.64
Zm00001d038768_P001 Maize extracellular, mitochondrion 52.61 47.64
Zm00001d043551_P003 Maize plasma membrane 52.61 47.08
CDY53913 Canola cytosol, peroxisome, plasma membrane 51.74 46.85
Bra003455.1-P Field mustard cytosol, peroxisome, plasma membrane 51.74 46.85
CDX90792 Canola cytosol, peroxisome, plasma membrane 54.35 46.82
Bra000739.1-P Field mustard cytosol 54.35 46.82
AT2G46170.1 Thale cress cytosol, nucleus, plasma membrane 51.74 46.67
Zm00001d012776_P001 Maize extracellular 51.3 46.64
Solyc10g011870.2.1 Tomato cytosol, nucleus, plasma membrane 53.04 46.39
AT3G61560.1 Thale cress cytosol, nucleus, plasma membrane 50.43 45.85
CDY25557 Canola cytosol, endoplasmic reticulum, nucleus 50.0 45.82
Bra027678.1-P Field mustard cytosol, endoplasmic reticulum, nucleus 50.0 45.82
CDY34396 Canola cytosol, endoplasmic reticulum, nucleus 49.57 45.42
CDY38194 Canola cytosol, nucleus, plasma membrane 49.13 45.2
GSMUA_Achr5P06850_001 Banana cytosol, nucleus, plasma membrane 49.13 45.2
AT4G11220.1 Thale cress nucleus 53.04 45.02
Zm00001d008982_P001 Maize cytosol, nucleus, plasma membrane 54.35 44.8
KRH40357 Soybean endoplasmic reticulum 50.0 44.75
KRH00872 Soybean endoplasmic reticulum 50.0 44.4
Bra027757.1-P Field mustard cytosol, endoplasmic reticulum, peroxisome 48.26 44.4
CDY57657 Canola cytosol, nucleus, plasma membrane 53.04 44.36
CDY08353 Canola cytosol, endoplasmic reticulum, nucleus 47.83 44.0
Bra010539.1-P Field mustard cytosol 51.3 43.87
Bra013717.1-P Field mustard nucleus 52.61 43.84
CDY44123 Canola cytosol, nucleus, plasma membrane 52.17 43.48
KRH06560 Soybean endoplasmic reticulum 48.26 43.36
CDY10954 Canola cytosol 50.87 43.33
Bra019285.1-P Field mustard cytosol 50.43 43.28
AT4G23630.2 Thale cress nucleus 51.74 43.27
CDY24806 Canola cytosol 51.3 43.07
AT5G41600.1 Thale cress cytosol, nucleus, plasma membrane 47.83 42.8
CDY41666 Canola cytosol 50.87 42.39
VIT_16s0050g01790.t01 Wine grape cytosol, nucleus, plasma membrane 45.65 41.34
Zm00001d039316_P001 Maize cytosol, nucleus, plasma membrane 54.78 41.18
KRH35223 Soybean cytosol, nucleus, plasma membrane 43.48 40.0
AT1G64090.2 Thale cress cytosol, endoplasmic reticulum, nucleus 46.52 39.48
Zm00001d037848_P008 Maize endoplasmic reticulum, nucleus, peroxisome 42.61 38.89
CDY05135 Canola mitochondrion 52.61 38.66
CDY07184 Canola cytosol, peroxisome, plasma membrane 39.57 37.45
Bra037369.1-P Field mustard cytosol 39.57 37.45
CDY48510 Canola cytosol 39.57 37.45
Zm00001d011631_P001 Maize golgi, peroxisome, plasma membrane 35.22 36.65
KRH48008 Soybean cytosol, peroxisome, plasma membrane 50.0 36.62
AT4G01230.2 Thale cress cytosol 37.83 35.66
Zm00001d034313_P001 Maize cytosol, nucleus, plasma membrane 38.26 35.48
Zm00001d038910_P001 Maize plasma membrane 34.78 35.24
VIT_02s0025g00590.t01 Wine grape mitochondrion 9.13 35.0
Zm00001d026575_P001 Maize mitochondrion, peroxisome, plasma membrane, plastid, vacuole 30.0 34.85
Zm00001d001901_P002 Maize plasma membrane 29.57 34.34
CDY62522 Canola cytosol 11.74 33.75
Bra035242.1-P Field mustard cytosol 29.13 33.5
Zm00001d018781_P001 Maize extracellular, mitochondrion 34.35 32.51
CDX89122 Canola extracellular, mitochondrion 21.3 32.03
Zm00001d047517_P001 Maize peroxisome 31.74 32.02
Zm00001d008590_P001 Maize plastid 18.26 31.58
CDX86802 Canola cytosol, nucleus, peroxisome 33.04 31.02
VIT_07s0031g02730.t01 Wine grape golgi, mitochondrion, nucleus, plasma membrane 23.48 30.0
Zm00001d042846_P001 Maize plasma membrane 27.39 30.0
KRG91601 Soybean mitochondrion 43.04 29.12
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 23.91 23.5
Protein Annotations
EntrezGene:100191702MapMan:13.7.2.1ProteinID:AQK69966.1UniProt:B4F9U6EMBL:BT033884EMBL:BT039888
EMBL:EU964734GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005783
GO:GO:0005789GO:GO:0016020GO:GO:0016021InterPro:IPR003388PFAM:PF02453PFscan:PS50845
PANTHER:PTHR10994PANTHER:PTHR10994:SF87InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00017B62F7EnsemblPlantsGene:Zm00001d016041
EnsemblPlants:Zm00001d016041_P001EnsemblPlants:Zm00001d016041_T001::::
Description
Reticulon-like protein B4
Coordinates
chr5:-:141197279..141201287
Molecular Weight (calculated)
25231.1 Da
IEP (calculated)
7.700
GRAVY (calculated)
0.357
Length
230 amino acids
Sequence
(BLAST)
001: MAAPAEETLA AEDTASPPPP ARSAGFWFLG EDKSVHKALG GGKTADVLLW KDKKTSAAVV GGATVLWVLF EIVEYHLLTL VSHVLIAALT ILFLWSNATV
101: FIKKSPPDVP EVQISEDLAV NIALALRADI NKALALLREI ALGHNLMKFL GVVVALWILS EIGELCDLLR LMYIVVLILH TVPILYHKYQ DQVDNFAAKA
201: HRELCKQYAV LDAKVLSKIP RAPPKDKKQN
Best Arabidopsis Sequence Match ( AT1G64090.1 )
(BLAST)
001: MAEEHKHEES IMEKISEKIH GHDDSSSSSS DSDDDKNSAS LKTKIYRLFG REQPLHKLFG GGKPADIFLW RNKKVSGGVL GAATVSWILF ELLEYNLLTL
101: FGHISILALA VLFLWSSAST FIHKSPLHIP EVHIPEDVVL QLASGLRIEI NRGFTVLRDI ASGRDLKKFL LVIAGLWVLS KVGSSCNFLT LIYIATVLLF
201: TIPVLYEKYE DKVDDFGEKA MREIKKQYVE FDVKVLSKVM SKIPKGAFAF IKKKD
Arabidopsis Description
RTNLB3Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:F4I596]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.