Factsheet for Zm00001d044412_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009496_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	Zm00001d009496_P001	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03240	Sorghum	cytosol, peroxisome, plastid	81.08	93.22
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	74.94	86.16
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	72.73	84.57
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	72.48	84.29
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	72.48	77.84
Zm00001d039182_P001	Maize	extracellular, plasma membrane	60.93	71.47
Solyc02g089780.2.1	Tomato	cytosol	20.15	67.77
VIT_14s0083g00300.t01	Wine grape	cytosol	52.83	63.24
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	53.32	62.36
PGSC0003DMT400048302	Potato	cytosol	53.07	62.07
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	52.09	61.1
Solyc03g045090.2.1	Tomato	nucleus, unclear	51.84	60.98
Bra021462.1-P	Field mustard	cytosol	51.35	60.93
KRG93820	Soybean	cytosol, nucleus, plastid	41.77	53.63
KRH18270	Soybean	endoplasmic reticulum	50.37	51.77
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	12.29	51.55
Zm00001d044089_P002	Maize	plastid	40.05	45.66

Protein Annotations

EnsemblPlants:Zm00001d044412_P001	EnsemblPlants:Zm00001d044412_T001	EnsemblPlantsGene:Zm00001d044412	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	ProteinID:ONM41086.1	SEG:seg
UniParc:UPI000842CA19	UniProt:A0A1D6NLI9	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3:-:227443732..227447458

Molecular Weight (calculated)

45651.1 Da

IEP (calculated)

10.103

GRAVY (calculated)

-0.043

Length

407 amino acids

Sequence
(BLAST)

001: MGEEDASAGG DPQRLKRIAA AAYDYENDAR WAGYWSNVLV PPHLASRPDV VDHFKRKFYQ RYIVSFPHPY LPKPPRTVAA RLDASLGSIG LDAPHAALSS
101: IRLTLFSALV PGRMICSMKE PDPGLVVEPM SSMTSTQSSR PAAKSSATPS SENVRARDSG SSTRSTGTSQ HPPAERTANS LQLDGRTINF SINAWVLVVA
201: SLGILPVLPN HISSKAYRLS LLGTICSSAY SLYGTYGKPR AWNMPAIQSW LQSIIVAKDF VHLMFSLMMF TSNVHFKIAL LPVLCWALDH VARFLRRNFT
301: HSSLYRKYLE DPCLWVETNN TTLSLLCSNA EITLGFLMII SLFSSRRNII QTFMYFHLLK LMYHSPVTSG YHQSVWARIG RAVNPYIYRY APFLNTPISA
401: VQRWWLR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.