Factsheet for TraesCS3A01G215100.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G381200.1
TraesCS1B01G403700.1
TraesCS1D01G389000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	TraesCS1A01G381200.1	AT5G49540.1	21798944
AT3G02420.1	TraesCS1B01G403700.1	AT5G49540.1	21798944
AT3G02420.1	TraesCS1D01G389000.1	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	97.14	97.14
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	95.14	87.86
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	87.71	86.72
EES03240	Sorghum	cytosol, peroxisome, plastid	84.0	83.05
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	84.29	72.48
Solyc02g089780.2.1	Tomato	cytosol	23.71	68.59
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	66.86	67.63
PGSC0003DMT400048302	Potato	cytosol	61.14	61.49
VIT_14s0083g00300.t01	Wine grape	cytosol	59.14	60.88
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	59.71	60.06
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	59.43	59.94
Solyc03g045090.2.1	Tomato	nucleus, unclear	59.14	59.83
Bra021462.1-P	Field mustard	cytosol	57.43	58.6
KRG93820	Soybean	cytosol, nucleus, plastid	47.71	52.68
KRH18270	Soybean	endoplasmic reticulum	58.29	51.52
TraesCS3A01G230700.1	Wheat	plastid	41.43	48.01
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	13.14	47.42

Protein Annotations

EnsemblPlants:TraesCS3A01G215100.1	EnsemblPlantsGene:TraesCS3A01G215100	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	SEG:seg	TMHMM:TMhelix	MapMan:35.2

Description

No Description!

Coordinates

chr3A:+:391885475..391889431

Molecular Weight (calculated)

39731.8 Da

IEP (calculated)

10.170

GRAVY (calculated)

-0.111

Length

350 amino acids

Sequence
(BLAST)

001: MGEADASTGG GDPQKLKRIA AGAYDYENDA RWAGYWSNVL VPPHLASRPD VVDHFKRKFY HRYIDPDLVV EPMSSTSSSQ SNRSAASSSS TPSSENSRAR
101: DTGSSARSTG ASQPAPTERT GNSLRFDGRT IHFSINAWVL IVASLGILPI LPKDVASKAY RLSLLGTICS SAYSLYCTYG KPRAWNMPAI QPWLQSIIVA
201: KDFVHLMFSL MMFTSNVRFK IVLLPVLCWA LDHVARFLRR NFARSSFYRR YMEEPCLWVE TNNTMISLLC SNAEITLGFL MIVSLFSWRR NIIQTFMYFH
301: LLKLMYHAPV TSGYHQSVWA RIGRAVNPHI HRYTPFLNTP ISAVQRWWLR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.