Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS1A01G381200.1 | |
| TraesCS1B01G403700.1 | |
| TraesCS1D01G389000.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | TraesCS1A01G381200.1 | AT5G49540.1 | 21798944 |
| AT3G02420.1 | TraesCS1B01G403700.1 | AT5G49540.1 | 21798944 |
| AT3G02420.1 | TraesCS1D01G389000.1 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G093680.1 | Barley | extracellular, golgi | 22.25 | 97.47 |
| HORVU1Hr1G095120.1 | Barley | extracellular | 9.25 | 96.97 |
| TraesCS1B01G464300.1 | Wheat | cytosol | 96.53 | 95.7 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 52.6 | 95.29 |
| TraesCS1D01G439000.1 | Wheat | cytosol | 96.53 | 94.62 |
| HORVU2Hr1G063720.1 | Barley | plastid | 75.14 | 94.55 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 68.79 | 90.15 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 85.84 | 88.39 |
| HORVU2Hr1G067170.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 40.17 | 87.97 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 86.13 | 84.9 |
| HORVU1Hr1G093720.5 | Barley | plastid | 95.38 | 84.62 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 55.78 | 82.83 |
| Os05t0589000-02 | Rice | plasma membrane | 82.95 | 81.77 |
| EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 82.37 | 81.43 |
| Zm00001d039182_P001 | Maize | extracellular, plasma membrane | 80.64 | 80.4 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 43.35 | 79.79 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 45.95 | 77.94 |
| TraesCS3A01G215100.1 | Wheat | cytosol, peroxisome, plastid | 67.63 | 66.86 |
| Solyc02g089780.2.1 | Tomato | cytosol | 21.39 | 61.16 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 58.96 | 60.0 |
| PGSC0003DMT400048302 | Potato | cytosol | 58.96 | 58.62 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 58.96 | 58.62 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 57.8 | 57.8 |
| Bra021462.1-P | Field mustard | cytosol | 56.94 | 57.43 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 56.65 | 56.48 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 45.66 | 49.84 |
| KRH18270 | Soybean | endoplasmic reticulum | 56.36 | 49.24 |
| TraesCS3A01G230700.1 | Wheat | plastid | 39.31 | 45.03 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G429400.1 | EnsemblPlantsGene:TraesCS1A01G429400 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM33/Pom33 |
| PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr1A:-:582708623..582711979
Molecular Weight (calculated)
38853.8 Da
IEP (calculated)
10.211
GRAVY (calculated)
-0.049
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGDAAAEQ EAKRAAAAAY DYEADPRWAD YWSNVLVPPH LAARPDVIAH FRRKFYQRFI DRDLVVEPMS TTGSTQPSRP DIRSSPSASS ESVRARNSGS
101: SSRSAAPPPA APQAGAANPL RFDAKTIHFS VNAWVLVVAG LGMLPILPKH LADRACKLSL LGTVLSSGYS LYSTYGKPRE LNMAAIQGWL QSVLGAKDFI
201: HLMFSLLLVT SQLHLKIAAL PVFCWALDHV ARFLRRNFSR SSFYRGYLEE PCLWVETNNT TLSLLSSNAE LALGFLLIIS LFSWRRNFIQ TFMYWNVLKM
301: MYRAPVTSSY HQSAWAKIGR TVNPYIDRYA PFLQTPISMV QRWWLR
101: SSRSAAPPPA APQAGAANPL RFDAKTIHFS VNAWVLVVAG LGMLPILPKH LADRACKLSL LGTVLSSGYS LYSTYGKPRE LNMAAIQGWL QSVLGAKDFI
201: HLMFSLLLVT SQLHLKIAAL PVFCWALDHV ARFLRRNFSR SSFYRGYLEE PCLWVETNNT TLSLLSSNAE LALGFLLIIS LFSWRRNFIQ TFMYWNVLKM
301: MYRAPVTSSY HQSAWAKIGR TVNPYIDRYA PFLQTPISMV QRWWLR
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.