Factsheet for HORVU1Hr1G093720.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G084220.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	HORVU1Hr1G084220.5	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G093680.1	Barley	extracellular, golgi	20.0	98.73
HORVU1Hr1G095120.1	Barley	extracellular	8.21	96.97
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	46.92	95.81
HORVU2Hr1G063720.1	Barley	plastid	67.44	95.64
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	84.62	95.38
TraesCS1B01G464300.1	Wheat	cytosol	84.62	94.56
TraesCS1D01G439000.1	Wheat	cytosol	85.38	94.33
HORVU6Hr1G054760.4	Barley	cytosol	62.05	91.67
HORVU4Hr1G007060.2	Barley	cytosol, plastid	77.69	90.18
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	35.64	87.97
HORVU5Hr1G029200.4	Barley	cytosol	77.69	86.32
HORVU3Hr1G044700.1	Barley	cytosol	51.03	85.41
Os05t0589000-02	Rice	plasma membrane	74.1	82.34
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	72.05	80.29
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	38.46	79.79
Zm00001d039182_P001	Maize	extracellular, plasma membrane	70.51	79.25
HORVU3Hr1G077280.2	Barley	mitochondrion	40.77	77.94
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	61.79	63.59
Solyc02g089780.2.1	Tomato	cytosol	19.23	61.98
VIT_14s0083g00300.t01	Wine grape	cytosol	52.05	59.71
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	52.82	59.2
PGSC0003DMT400048302	Potato	cytosol	52.56	58.91
Solyc03g045090.2.1	Tomato	nucleus, unclear	51.79	58.38
Bra021462.1-P	Field mustard	cytosol	51.03	58.02
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	50.51	56.77
KRG93820	Soybean	cytosol, nucleus, plastid	41.03	50.47
KRH18270	Soybean	endoplasmic reticulum	50.26	49.49

Protein Annotations

EnsemblPlants:HORVU1Hr1G093720.5	EnsemblPlantsGene:HORVU1Hr1G093720	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	SEG:seg	UniParc:UPI000B4831D8	UniProt:A0A287GSQ1
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:553850633..553854857

Molecular Weight (calculated)

43346.0 Da

IEP (calculated)

10.313

GRAVY (calculated)

-0.182

Length

390 amino acids

Sequence
(BLAST)

001: GRVNKPNKSP PPPPEIPQTS LPPKSPKSPS PTATSSAAEM GGGDAGPEVA AAEQEAKRAA AAAYDYEADP RWADYWSNVL VPPHLAARPD VLAHFRRKFY
101: QRFIDRDLVV EPMSTTGSTQ PSRPDIRSSP SASSENVRAR NSGSSSRSAA PPPAAPQAGA ANPLRFDART IHFSVNAWVL VVAGLGMLPI LPKHLADRAC
201: KLSLLGTVLS SGYSLYSTYG KPRELNMPAI QGWLQSVLGA KDFIHLMFSL LLVTSQLHLK IAALPVFCWA LDHVARFLRR NFSRSSFYRG YLEEPCLWVE
301: TNNTTLSLLS SNAELALGFL LIISLFSWRR NFIQTFMYWN VLKMMYRAPV TSSYHQSAWA KIGRTVNPYI DRYAPFLQTP ISMVQRWWLR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.