Factsheet for HORVU5Hr1G029200.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G084220.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	HORVU1Hr1G084220.5	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G093680.1	Barley	extracellular, golgi	20.51	91.14
HORVU1Hr1G095120.1	Barley	extracellular	8.55	90.91
HORVU2Hr1G063720.1	Barley	plastid	71.23	90.91
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	49.29	90.58
HORVU6Hr1G054760.4	Barley	cytosol	64.96	86.36
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	84.9	86.13
TraesCS1B01G464300.1	Wheat	cytosol	84.9	85.39
HORVU4Hr1G007060.2	Barley	cytosol, plastid	80.34	83.93
TraesCS1D01G439000.1	Wheat	cytosol	84.05	83.57
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	37.32	82.91
HORVU3Hr1G044700.1	Barley	cytosol	52.14	78.54
HORVU1Hr1G093720.5	Barley	plastid	86.32	77.69
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	40.46	75.53
Os05t0589000-02	Rice	plasma membrane	73.79	73.79
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	73.5	73.71
HORVU3Hr1G077280.2	Barley	mitochondrion	42.45	73.04
Zm00001d039182_P001	Maize	extracellular, plasma membrane	70.94	71.76
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	60.68	56.2
VIT_14s0083g00300.t01	Wine grape	cytosol	52.99	54.71
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	54.13	54.6
Bra021462.1-P	Field mustard	cytosol	52.71	53.94
PGSC0003DMT400048302	Potato	cytosol	52.71	53.16
Solyc03g045090.2.1	Tomato	nucleus, unclear	52.14	52.89
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	50.71	51.3
KRG93820	Soybean	cytosol, nucleus, plastid	43.3	47.95
Solyc02g089780.2.1	Tomato	cytosol	16.52	47.93
KRH18270	Soybean	endoplasmic reticulum	52.14	46.21

Protein Annotations

EnsemblPlants:HORVU5Hr1G029200.4	EnsemblPlantsGene:HORVU5Hr1G029200	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM33/Pom33
PANTHER:PTHR30603	PANTHER:PTHR30603:SF41	PFAM:PF03661	SEG:seg	UniParc:UPI000B472DCD	UniProt:A0A287QSJ5
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:175422001..175425463

Molecular Weight (calculated)

39684.7 Da

IEP (calculated)

10.105

GRAVY (calculated)

-0.118

Length

351 amino acids

Sequence
(BLAST)

001: LLTHHGGPEV VATEEEAKRV VAAAYDYEAD PRWADYWSDV LVSPHLATRP GVLAHFRCKF YQSFTDRDLV VEPMSTTGST QPSRPDIRSS RSASSENVRA
101: RNSGSSSRLA APPAAAPQAG AANPLRFDAR TIHFSVNAWV LVVAGLGMLP IFPKHLAERA CKLSLLGTVL SSGYSLYSTY GKPRELNMPA IQTWLQSVVG
201: AKDFIRLRFS LLLVTSQLHL KIAVLPVFCW ALDHVARFQR RNFSRSSFYR GYLEEPCLWV ETNNTTLSLL CSNAELALGF LLIISLFSWR HNFIQTFMYW
301: DVLKMMYRAP VTSSYHQSAW AKIGRTVNPY IDRCAPFLQT QWRRRPSRPP R

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.