Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G084220.5 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | HORVU1Hr1G084220.5 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G246200.2 | Wheat | cytosol, peroxisome, plastid | 87.86 | 95.14 |
| TraesCS3A01G215100.1 | Wheat | cytosol, peroxisome, plastid | 87.86 | 95.14 |
| Os01t0604700-01 | Rice | cytosol, peroxisome, plastid | 80.74 | 86.44 |
| EES03240 | Sorghum | cytosol, peroxisome, plastid | 79.16 | 84.75 |
| Zm00001d044412_P001 | Maize | cytosol, nucleus, peroxisome | 77.84 | 72.48 |
| HORVU1Hr1G093680.1 | Barley | extracellular, golgi | 14.78 | 70.89 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 34.56 | 68.59 |
| Solyc02g089780.2.1 | Tomato | cytosol | 21.11 | 66.12 |
| HORVU2Hr1G067170.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 27.44 | 65.82 |
| HORVU2Hr1G063720.1 | Barley | plastid | 47.23 | 65.09 |
| HORVU1Hr1G095120.1 | Barley | extracellular | 5.54 | 63.64 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 43.8 | 62.88 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 55.41 | 62.5 |
| HORVU1Hr1G093720.5 | Barley | plastid | 63.59 | 61.79 |
| PGSC0003DMT400048302 | Potato | cytosol | 56.46 | 61.49 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 54.62 | 60.88 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 56.2 | 60.68 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 29.82 | 60.11 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 54.62 | 59.83 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 54.35 | 59.37 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 54.35 | 59.2 |
| Bra021462.1-P | Field mustard | cytosol | 52.51 | 58.02 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 31.13 | 57.84 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 34.83 | 56.65 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 43.8 | 52.37 |
| KRH18270 | Soybean | endoplasmic reticulum | 53.83 | 51.52 |
| GSMUA_Achr7P17180_001 | Banana | cytosol, mitochondrion, nucleus | 12.14 | 47.42 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G052820.4 | EnsemblPlantsGene:HORVU3Hr1G052820 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM33/Pom33 |
| PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 | SEG:seg | UniParc:UPI000B46EE5B | UniProt:A0A287L2C2 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:386844515..386848536
Molecular Weight (calculated)
42538.9 Da
IEP (calculated)
9.997
GRAVY (calculated)
-0.131
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: LIFGSSRITS LQTQTPEGSG GSSVAMGEAD ADADASNGGG DPQKLKRIGA GAYDYENDAR WAGYWSNVLV PPHLASRPDV VDHFKRKFYQ RYIDPDLVVE
101: PISSTSSTQS NRSAASSSST PSSENARARD TGSSARSTGA SQSPPTERTG NSLRFDGRTI HFSINAWVLF VASLGILPIL PKDVASKAYR LSLLGTICSS
201: AYSLYCTYGK PRAWNMPAIQ PWLQSIIVAK DFVHLMFSLM MFTSNVRFKI VLLPVLCWTL DHVARFLRRN FARSSLYRRY MEEPCLWVET NNTTISLLCS
301: NAEITLGFLM IVSLFSWKRN IIQTFMYFHL LKLMYHAPVT SGYHQSVWAR IGRAINPHIH RYTPFLNTPI SAVQRWWLR
101: PISSTSSTQS NRSAASSSST PSSENARARD TGSSARSTGA SQSPPTERTG NSLRFDGRTI HFSINAWVLF VASLGILPIL PKDVASKAYR LSLLGTICSS
201: AYSLYCTYGK PRAWNMPAIQ PWLQSIIVAK DFVHLMFSLM MFTSNVRFKI VLLPVLCWTL DHVARFLRRN FARSSLYRRY MEEPCLWVET NNTTISLLCS
301: NAEITLGFLM IVSLFSWKRN IIQTFMYFHL LKLMYHAPVT SGYHQSVWAR IGRAINPHIH RYTPFLNTPI SAVQRWWLR
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.