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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 1
  • plastid 1
  • peroxisome 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01277
EES19917

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0604700-01 Rice cytosol, peroxisome, plastid 87.57 87.57
TraesCS3B01G246200.2 Wheat cytosol, peroxisome, plastid 83.33 84.29
TraesCS3A01G215100.1 Wheat cytosol, peroxisome, plastid 83.05 84.0
Zm00001d044412_P001 Maize cytosol, nucleus, peroxisome 93.22 81.08
HORVU3Hr1G052820.4 Barley mitochondrion, peroxisome 84.75 79.16
EES18791 Sorghum cytosol, endoplasmic reticulum, peroxisome 68.64 69.43
Solyc02g089780.2.1 Tomato cytosol 22.88 66.94
VIT_14s0083g00300.t01 Wine grape cytosol 59.89 62.35
AT3G02420.1 Thale cress cytosol, endoplasmic reticulum, peroxisome 61.02 62.07
PGSC0003DMT400048302 Potato cytosol 60.73 61.78
Solyc03g045090.2.1 Tomato nucleus, unclear 59.32 60.69
Bra021462.1-P Field mustard cytosol 58.76 60.64
PGSC0003DMT400026189 Potato cytosol, nucleus, peroxisome 59.04 60.23
KRG93820 Soybean cytosol, nucleus, plastid 47.46 53.0
GSMUA_Achr7P17180_001 Banana cytosol, mitochondrion, nucleus 14.12 51.55
KRH18270 Soybean endoplasmic reticulum 57.34 51.26
EES03339 Sorghum plastid 48.02 50.75
Protein Annotations
EnsemblPlants:EES03240EnsemblPlantsGene:SORBI_3003G212100EntrezGene:8082510GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:TMEM33/Pom33PANTHER:PTHR30603PANTHER:PTHR30603:SF41PFAM:PF03661ProteinID:EES03240ProteinID:EES03240.1
RefSeq:XP_002458120.1SEG:segunigene:Sbi.8806UniParc:UPI0001A84F2DUniProt:C5XQA8MapMan:35.2
Description
hypothetical protein
Coordinates
chr3:-:54664553..54668897
Molecular Weight (calculated)
39856.9 Da
IEP (calculated)
10.177
GRAVY (calculated)
-0.063
Length
354 amino acids
Sequence
(BLAST)
001: MGEADASAGG SGAGGDPQRL KRIAAAAYDY ENDARWAGYW SNVLVPPHLA SRPDVVDHFK RKFYQRYIDP GLVVEPMSSM TSTQSSRPAA RSSATPSGEN
101: VRSRDSASST RSTGASQQPS AERTANSLRL DGRTIHFSIN AWVLVVASVG ILPVLPNHIS SKAYRLSLLG TICSSAYSLY STYGKPRAWN MPAIQSWLQS
201: IIVAKDFVHL MFSLMMFTSN VHFKIALLPV LCWALDHVAR FLRRNFTHSS LYRKYLEDPC LWVETNNTTL SLLCSNAEIT LGFLMIISLF SSRRNIIQTF
301: MYFHLLKLMY HSPVTSGYHQ SVWARIGRAV NPYIYRYAPF LNTPILAVQR WWLR
Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.