Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G02420.1 | EES01277 | AT5G49540.1 | 21798944 |
AT3G02420.1 | EES19917 | AT5G49540.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os01t0604700-01 | Rice | cytosol, peroxisome, plastid | 87.57 | 87.57 |
TraesCS3B01G246200.2 | Wheat | cytosol, peroxisome, plastid | 83.33 | 84.29 |
TraesCS3A01G215100.1 | Wheat | cytosol, peroxisome, plastid | 83.05 | 84.0 |
Zm00001d044412_P001 | Maize | cytosol, nucleus, peroxisome | 93.22 | 81.08 |
HORVU3Hr1G052820.4 | Barley | mitochondrion, peroxisome | 84.75 | 79.16 |
EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 68.64 | 69.43 |
Solyc02g089780.2.1 | Tomato | cytosol | 22.88 | 66.94 |
VIT_14s0083g00300.t01 | Wine grape | cytosol | 59.89 | 62.35 |
AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 61.02 | 62.07 |
PGSC0003DMT400048302 | Potato | cytosol | 60.73 | 61.78 |
Solyc03g045090.2.1 | Tomato | nucleus, unclear | 59.32 | 60.69 |
Bra021462.1-P | Field mustard | cytosol | 58.76 | 60.64 |
PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 59.04 | 60.23 |
KRG93820 | Soybean | cytosol, nucleus, plastid | 47.46 | 53.0 |
GSMUA_Achr7P17180_001 | Banana | cytosol, mitochondrion, nucleus | 14.12 | 51.55 |
KRH18270 | Soybean | endoplasmic reticulum | 57.34 | 51.26 |
EES03339 | Sorghum | plastid | 48.02 | 50.75 |
Protein Annotations
EnsemblPlants:EES03240 | EnsemblPlantsGene:SORBI_3003G212100 | EntrezGene:8082510 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
InterPro:TMEM33/Pom33 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 | ProteinID:EES03240 | ProteinID:EES03240.1 |
RefSeq:XP_002458120.1 | SEG:seg | unigene:Sbi.8806 | UniParc:UPI0001A84F2D | UniProt:C5XQA8 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr3:-:54664553..54668897
Molecular Weight (calculated)
39856.9 Da
IEP (calculated)
10.177
GRAVY (calculated)
-0.063
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEADASAGG SGAGGDPQRL KRIAAAAYDY ENDARWAGYW SNVLVPPHLA SRPDVVDHFK RKFYQRYIDP GLVVEPMSSM TSTQSSRPAA RSSATPSGEN
101: VRSRDSASST RSTGASQQPS AERTANSLRL DGRTIHFSIN AWVLVVASVG ILPVLPNHIS SKAYRLSLLG TICSSAYSLY STYGKPRAWN MPAIQSWLQS
201: IIVAKDFVHL MFSLMMFTSN VHFKIALLPV LCWALDHVAR FLRRNFTHSS LYRKYLEDPC LWVETNNTTL SLLCSNAEIT LGFLMIISLF SSRRNIIQTF
301: MYFHLLKLMY HSPVTSGYHQ SVWARIGRAV NPYIYRYAPF LNTPILAVQR WWLR
101: VRSRDSASST RSTGASQQPS AERTANSLRL DGRTIHFSIN AWVLVVASVG ILPVLPNHIS SKAYRLSLLG TICSSAYSLY STYGKPRAWN MPAIQSWLQS
201: IIVAKDFVHL MFSLMMFTSN VHFKIALLPV LCWALDHVAR FLRRNFTHSS LYRKYLEDPC LWVETNNTTL SLLCSNAEIT LGFLMIISLF SSRRNIIQTF
301: MYFHLLKLMY HSPVTSGYHQ SVWARIGRAV NPYIYRYAPF LNTPILAVQR WWLR
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.