CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01277
EES19917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	EES01277	AT5G49540.1	21798944
AT3G02420.1	EES19917	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0641700-01	Rice	plastid	68.36	85.13
Zm00001d044089_P002	Maize	plastid	84.48	79.27
TraesCS3D01G222600.1	Wheat	plastid	68.06	75.5
TraesCS3A01G230700.1	Wheat	plastid	68.06	75.5
TraesCS3B01G260000.1	Wheat	plasma membrane	68.66	72.56
GSMUA_Achr8P29730_001	Banana	cytosol	54.03	52.62
VIT_14s0083g00300.t01	Wine grape	cytosol	50.75	50.0
GSMUA_Achr7P17170_001	Banana	plastid	42.99	49.66
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	51.94	48.88
EES03240	Sorghum	cytosol, peroxisome, plastid	50.75	48.02
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	49.25	47.14
PGSC0003DMT400048302	Potato	cytosol	48.66	46.84
Solyc03g045090.2.1	Tomato	nucleus, unclear	48.36	46.82
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	48.06	46.4
Bra021462.1-P	Field mustard	cytosol	47.46	46.36
Solyc02g089780.2.1	Tomato	cytosol	16.72	46.28
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	45.97	44.25
KRG93820	Soybean	cytosol, nucleus, plastid	37.31	39.43
KRH18270	Soybean	endoplasmic reticulum	45.97	38.89

Protein Annotations

EnsemblPlants:EES03339	EnsemblPlantsGene:SORBI_3003G235200	EntrezGene:8058224	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF20	PFAM:PF03661	ProteinID:EES03339	ProteinID:EES03339.1
RefSeq:XP_002458219.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.16196	UniParc:UPI0001A850E9	UniProt:C5XF38
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:57358601..57367919

Molecular Weight (calculated)

38130.8 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.069

Length

335 amino acids

Sequence
(BLAST)

001: MGDASSSSWP STGAAAAYDY ERDPRWAEYR ASSAVPPHLF SHPYVRAHLQ QKFYRRFVDP DFSVKGMSST TSTQPSASSG GASTSADENA RPPDSGTNSS
101: GPARSILSLQ LDQRSLHFSV SAWVLIVALI GIFPLAPHAL QYKGYRLSLL GTTCTTGYAL FALYRLPRAG NLQAVQAWCH HVTSSKDFIP FMYCLMFATS
201: KLHLKLVLVP VICWALEHVA RFLRRHFTSS SLYRTYLEQP CTWVETNTTA VHFLRSNSEI LLGFLLILSL FSRQRNVMQT FMYWQLLKLM YHSPFTAAYH
301: RAIWLKIGRT INPYIQHYTP FLHDPINAGM RWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.