CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89626
KRH00023
KRH02404
KRH11903
KRH36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	KRG89626	AT5G49540.1	21798944
AT3G02420.1	KRH00023	AT5G49540.1	21798944
AT3G02420.1	KRH02404	AT5G49540.1	21798944
AT3G02420.1	KRH11903	AT5G49540.1	21798944
AT3G02420.1	KRH36943	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93820	Soybean	cytosol, nucleus, plastid	68.94	86.12
VIT_14s0083g00300.t01	Wine grape	cytosol	62.88	73.24
Solyc02g089780.2.1	Tomato	cytosol	22.22	72.73
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	63.38	72.33
Solyc03g045090.2.1	Tomato	nucleus, unclear	63.13	72.25
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	62.88	71.55
PGSC0003DMT400048302	Potato	cytosol	62.37	70.98
Bra021462.1-P	Field mustard	cytosol	61.11	70.55
GSMUA_Achr8P29730_001	Banana	cytosol	55.3	63.66
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	53.54	59.55
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	52.27	58.47
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	51.52	58.29
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	28.03	58.12
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	50.76	57.43
EES03240	Sorghum	cytosol, peroxisome, plastid	51.26	57.34
Os05t0589000-02	Rice	plasma membrane	50.51	56.98
Zm00001d039182_P001	Maize	extracellular, plasma membrane	49.75	56.77
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	49.24	56.36
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	49.75	56.29
TraesCS1B01G464300.1	Wheat	cytosol	49.49	56.16
TraesCS1D01G439000.1	Wheat	cytosol	49.75	55.81
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	13.64	55.67
GSMUA_Achr7P17170_001	Banana	plastid	40.4	55.17
HORVU1Hr1G093680.1	Barley	extracellular, golgi	10.86	54.43
HORVU2Hr1G063720.1	Barley	plastid	37.63	54.18
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	51.52	53.83
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	21.46	53.8
HORVU4Hr1G007060.2	Barley	cytosol, plastid	45.2	53.27
HORVU5Hr1G029200.4	Barley	cytosol	46.21	52.14
HORVU6Hr1G054760.4	Barley	cytosol	34.6	51.89
HORVU1Hr1G095120.1	Barley	extracellular	4.29	51.52
Os01t0641700-01	Rice	plastid	34.34	50.56
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	23.99	50.53
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	51.77	50.37
HORVU1Hr1G093720.5	Barley	plastid	49.49	50.26
HORVU3Hr1G077280.2	Barley	mitochondrion	24.75	48.04
EES03339	Sorghum	plastid	38.89	45.97
TraesCS3A01G230700.1	Wheat	plastid	34.34	45.03
TraesCS3D01G222600.1	Wheat	plastid	34.34	45.03
TraesCS3B01G260000.1	Wheat	plasma membrane	34.85	43.53
HORVU3Hr1G044700.1	Barley	cytosol	24.75	42.06
Zm00001d044089_P002	Maize	plastid	36.62	40.62

Protein Annotations

EMBL:ACUP02008050	EnsemblPlants:KRH18270	EnsemblPlantsGene:GLYMA_13G047900	EntrezGene:100794639	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	PFAM:PF03661	ProteinID:KRH18270
ProteinID:KRH18270.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00023D016C	UniProt:I1LX03	MapMan:35.2

Description

hypothetical protein

Coordinates

chr13:-:14333624..14339258

Molecular Weight (calculated)

45799.0 Da

IEP (calculated)

9.717

GRAVY (calculated)

-0.185

Length

396 amino acids

Sequence
(BLAST)

001: MEERVLKQVV EEEEGGKSKM GEEREDPQKL KRLAADSYDY DNDSRWPDYW NNVLIPPHMA SRDDVVSHFK RKFYQRYVDP DFVVEPMSVG GSSSQPVRSS
101: TTSSSSPLTN NQPRARSSGS TNRTSGTSTT AGPGPSPTPL RWDRQTVLFS VNAWVFVVAF LAAIPLVPKH LSHRAYRLCF LGTLCSSLYS LYSQYGKPRA
201: WNWQALQVYF QSIIASKDFL YFIYCLTFVT SHLCLKFALI PILCWSFEHV AKFLRRNFSR STLYRKYLEE PCVWVESNSS TLNIVTSHAE IGLGFLLIIS
301: LFSWQRNIIQ AFMYWQLLKL MYHIPVTAPY HQSVWAQIGR SVNPLIQRHA PFLKTPISTI QRWWLRCLSI LGREGVSCIR YQHQLVKISN HLISWF

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [cytosol,endoplasmic reticulum,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.