CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89626
KRH00023
KRH02404
KRH11903
KRH36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	KRG89626	AT5G49540.1	21798944
AT3G02420.1	KRH00023	AT5G49540.1	21798944
AT3G02420.1	KRH02404	AT5G49540.1	21798944
AT3G02420.1	KRH11903	AT5G49540.1	21798944
AT3G02420.1	KRH36943	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH18270	Soybean	endoplasmic reticulum	86.12	68.94
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	65.93	60.06
VIT_14s0083g00300.t01	Wine grape	cytosol	64.04	59.71
Solyc03g045090.2.1	Tomato	nucleus, unclear	64.67	59.25
Bra021462.1-P	Field mustard	cytosol	63.72	58.89
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	64.04	58.5
PGSC0003DMT400048302	Potato	cytosol	64.04	58.33
HORVU1Hr1G093680.1	Barley	extracellular, golgi	13.88	55.7
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	26.18	52.53
GSMUA_Achr8P29730_001	Banana	cytosol	56.15	51.74
GSMUA_Achr7P17180_001	Banana	cytosol, mitochondrion, nucleus	15.77	51.55
HORVU1Hr1G095120.1	Barley	extracellular	5.36	51.52
GSMUA_Achr1P25230_001	Banana	cytosol, endoplasmic reticulum, peroxisome	54.57	48.6
Os01t0604700-01	Rice	cytosol, peroxisome, plastid	53.94	48.31
HORVU6Hr1G054760.4	Barley	cytosol	39.75	47.73
TraesCS3A01G215100.1	Wheat	cytosol, peroxisome, plastid	52.68	47.71
EES03240	Sorghum	cytosol, peroxisome, plastid	53.0	47.46
TraesCS3B01G246200.2	Wheat	cytosol, peroxisome, plastid	52.05	47.14
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	27.76	46.81
HORVU4Hr1G007060.2	Barley	cytosol, plastid	49.53	46.73
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	28.08	46.6
HORVU2Hr1G063720.1	Barley	plastid	40.06	46.18
Os05t0589000-02	Rice	plasma membrane	51.1	46.15
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	49.84	45.66
TraesCS1B01G464300.1	Wheat	cytosol	50.16	45.56
Zm00001d039182_P001	Maize	extracellular, plasma membrane	49.84	45.53
TraesCS1D01G439000.1	Wheat	cytosol	50.47	45.33
EES18791	Sorghum	cytosol, endoplasmic reticulum, peroxisome	49.53	44.86
HORVU3Hr1G052820.4	Barley	mitochondrion, peroxisome	52.37	43.8
HORVU5Hr1G029200.4	Barley	cytosol	47.95	43.3
HORVU3Hr1G077280.2	Barley	mitochondrion	27.44	42.65
HORVU3Hr1G044700.1	Barley	cytosol	31.23	42.49
GSMUA_Achr7P17170_001	Banana	plastid	38.8	42.41
Zm00001d044412_P001	Maize	cytosol, nucleus, peroxisome	53.63	41.77
HORVU1Hr1G093720.5	Barley	plastid	50.47	41.03
Os01t0641700-01	Rice	plastid	33.75	39.78
EES03339	Sorghum	plastid	39.43	37.31
Solyc02g089780.2.1	Tomato	cytosol	13.56	35.54
TraesCS3A01G230700.1	Wheat	plastid	33.75	35.43
TraesCS3D01G222600.1	Wheat	plastid	33.75	35.43
TraesCS3B01G260000.1	Wheat	plasma membrane	34.07	34.07
Zm00001d044089_P002	Maize	plastid	36.28	32.21

Protein Annotations

EMBL:ACUP02011630	EnsemblPlants:KRG93820	EnsemblPlantsGene:GLYMA_19G043700	EntrezGene:106797531	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM33/Pom33	PANTHER:PTHR30603	PANTHER:PTHR30603:SF18	PFAM:PF03661	ProteinID:KRG93820
ProteinID:KRG93820.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0006EDC940	UniProt:A0A0R0EHX1	MapMan:35.2

Description

hypothetical protein

Coordinates

chr19:+:6419163..6422472

Molecular Weight (calculated)

35922.2 Da

IEP (calculated)

9.738

GRAVY (calculated)

-0.091

Length

317 amino acids

Sequence
(BLAST)

001: MGEDPQKLKR LAADSYDYDN DSRWPGYWNN VLIPPHMASR DDVVSHFKRK FYQRYVDPDL VVEPMSVGGS SSQPTRSSTT SSSSSPPTNN QPRARSSGST
101: NRTSGTSTTA GPGPSPTPLR WDRQTVLFSV YAWVFVVAFL AAIPLVPKHL SHRAYRLCFL GTLCSSLYSL YSQYGKPRAW NLQALQVYFQ SIVASKDFIY
201: FIYCLTFVTS HLCLKFALIP ILCWSFEHVA KFLRRNFSRS TLYRKYLEEP CVWVESNNST LNILTSHAEI GLGFLRIIPL FSKVSQLFFP PPPPLPVMFL
301: SLLNGGGMAW RIFCQPL

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.