CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
endoplasmic reticulum 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01277
EES19917

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02420.1	EES01277	AT5G49540.1	21798944
AT3G02420.1	EES19917	AT5G49540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039182_P001	Maize	extracellular, plasma membrane	91.71	92.51
HORVU1Hr1G095120.1	Barley	extracellular	8.29	87.88
Os05t0589000-02	Rice	plasma membrane	85.71	85.47
HORVU2Hr1G063710.1	Barley	extracellular, golgi, mitochondrion, plastid	46.29	84.82
HORVU1Hr1G093680.1	Barley	extracellular, golgi	19.14	84.81
HORVU2Hr1G063720.1	Barley	plastid	64.86	82.55
TraesCS1A01G429400.1	Wheat	cytosol, peroxisome, plasma membrane	81.43	82.37
HORVU2Hr1G067170.1	Barley	golgi, mitochondrion, plasma membrane, plastid	36.57	81.01
TraesCS1B01G464300.1	Wheat	cytosol	79.71	79.94
TraesCS1D01G439000.1	Wheat	cytosol	80.29	79.6
HORVU6Hr1G054760.4	Barley	cytosol	59.43	78.79
HORVU4Hr1G007060.2	Barley	cytosol, plastid	73.14	76.19
HORVU5Hr1G029200.4	Barley	cytosol	73.71	73.5
HORVU1Hr1G093720.5	Barley	plastid	80.29	72.05
HORVU3Hr1G077290.1	Barley	extracellular, golgi, mitochondrion, plastid	38.57	71.81
HORVU3Hr1G044700.1	Barley	cytosol	47.14	70.82
HORVU3Hr1G077280.2	Barley	mitochondrion	40.86	70.1
EES03240	Sorghum	cytosol, peroxisome, plastid	69.43	68.64
Solyc02g089780.2.1	Tomato	cytosol	22.29	64.46
VIT_14s0083g00300.t01	Wine grape	cytosol	60.57	62.35
Solyc03g045090.2.1	Tomato	nucleus, unclear	60.0	60.69
AT3G02420.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	60.0	60.34
PGSC0003DMT400048302	Potato	cytosol	60.0	60.34
PGSC0003DMT400026189	Potato	cytosol, nucleus, peroxisome	56.57	57.06
Bra021462.1-P	Field mustard	cytosol	55.43	56.56
KRH18270	Soybean	endoplasmic reticulum	56.29	49.75
KRG93820	Soybean	cytosol, nucleus, plastid	44.86	49.53
EES03339	Sorghum	plastid	47.14	49.25

Protein Annotations

MapMan:35.2	EntrezGene:8065311	UniProt:C5YWX8	EnsemblPlants:EES18791	ProteinID:EES18791	ProteinID:EES18791.1
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ProteinID:OQU78524.1	ProteinID:OQU78525.1	ProteinID:OQU78526.1
ProteinID:OQU78527.1	ProteinID:OQU78528.1	ProteinID:OQU78529.1	PFAM:PF03661	PANTHER:PTHR30603	PANTHER:PTHR30603:SF41
EnsemblPlantsGene:SORBI_3009G252800	unigene:Sbi.16086	InterPro:TMEM33/Pom33	UniParc:UPI0001A88885	RefSeq:XP_002440361.1	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:58715447..58721976

Molecular Weight (calculated)

39831.6 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.173

Length

350 amino acids

Sequence
(BLAST)

001: MEGSAADAEQ EQEQKRAAAA AAYDYEGDAR WADYWSNVLL PPNLASRPDV VDHFKRKFYQ RYIDHDLVVE PRSFTGSTQP SRPDVRSSSS SSSENVRARN
101: SGSTSRSAPS PPPTTQTDSA ANPLRFDART IHFSINAWIL VVSGLGMLPI LPKHLADRAC KLSLLGTILS SGYSLYSTYG KPRAWNMPAI QAWLQSVLAT
201: KDFIRLMFSS MLFTSQLHLK IAALPVLCWA LDHVARFLRR NFARSSFYRQ YLEEPCLWVE TNNTTLSLLS SNAEIALGFL LIISLLSWRR SIIQTFMYWQ
301: VLKLMYHAPV TSSYHQSAWA KIGRIVNPYI HRYAPFLQTP ISAIQRWWFR

Best Arabidopsis Sequence Match ( AT3G02420.1 )
(BLAST)

001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR

Arabidopsis Description

AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.