Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 27341663 |
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d009496_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G02420.1 | Zm00001d009496_P001 | AT5G49540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18791 | Sorghum | cytosol, endoplasmic reticulum, peroxisome | 92.51 | 91.71 |
| HORVU1Hr1G095120.1 | Barley | extracellular | 8.65 | 90.91 |
| HORVU1Hr1G093680.1 | Barley | extracellular, golgi | 19.6 | 86.08 |
| HORVU2Hr1G063710.1 | Barley | extracellular, golgi, mitochondrion, plastid | 46.97 | 85.34 |
| Os05t0589000-02 | Rice | plasma membrane | 85.59 | 84.62 |
| HORVU2Hr1G067170.1 | Barley | golgi, mitochondrion, plasma membrane, plastid | 37.46 | 82.28 |
| TraesCS1A01G429400.1 | Wheat | cytosol, peroxisome, plasma membrane | 80.4 | 80.64 |
| HORVU2Hr1G063720.1 | Barley | plastid | 63.11 | 79.64 |
| TraesCS1B01G464300.1 | Wheat | cytosol | 79.25 | 78.8 |
| TraesCS1D01G439000.1 | Wheat | cytosol | 79.83 | 78.47 |
| HORVU6Hr1G054760.4 | Barley | cytosol | 57.93 | 76.14 |
| HORVU4Hr1G007060.2 | Barley | cytosol, plastid | 72.05 | 74.4 |
| HORVU3Hr1G077290.1 | Barley | extracellular, golgi, mitochondrion, plastid | 39.19 | 72.34 |
| HORVU5Hr1G029200.4 | Barley | cytosol | 71.76 | 70.94 |
| HORVU3Hr1G077280.2 | Barley | mitochondrion | 41.5 | 70.59 |
| HORVU1Hr1G093720.5 | Barley | plastid | 79.25 | 70.51 |
| HORVU3Hr1G044700.1 | Barley | cytosol | 45.24 | 67.38 |
| Solyc02g089780.2.1 | Tomato | cytosol | 22.19 | 63.64 |
| Zm00001d044412_P001 | Maize | cytosol, nucleus, peroxisome | 71.47 | 60.93 |
| AT3G02420.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.81 | 60.63 |
| VIT_14s0083g00300.t01 | Wine grape | cytosol | 58.79 | 60.0 |
| PGSC0003DMT400048302 | Potato | cytosol | 59.94 | 59.77 |
| Solyc03g045090.2.1 | Tomato | nucleus, unclear | 59.37 | 59.54 |
| PGSC0003DMT400026189 | Potato | cytosol, nucleus, peroxisome | 57.93 | 57.93 |
| Bra021462.1-P | Field mustard | cytosol | 55.91 | 56.56 |
| KRG93820 | Soybean | cytosol, nucleus, plastid | 45.53 | 49.84 |
| KRH18270 | Soybean | endoplasmic reticulum | 56.77 | 49.75 |
| Zm00001d044089_P002 | Maize | plastid | 44.67 | 43.42 |
Protein Annotations
| EMBL:EU976796 | EnsemblPlants:Zm00001d039182_P001 | EnsemblPlants:Zm00001d039182_T001 | EnsemblPlantsGene:Zm00001d039182 | EntrezGene:100216801 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:TMEM33/Pom33 | PANTHER:PTHR30603 | PANTHER:PTHR30603:SF41 | PFAM:PF03661 |
| ProteinID:AQK88989.1 | SEG:seg | UniParc:UPI000182FE5F | UniProt:B6UHT1 | MapMan:35.2 | : |
Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:B6UHT1]
Coordinates
chr6:-:172040849..172046215
Molecular Weight (calculated)
39605.4 Da
IEP (calculated)
10.087
GRAVY (calculated)
-0.140
Length
347 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSAADAEQ EQKRAAAAAY DYEGDARWAE YWSNVLVPPN LASRPDVVDH LKRKFYQRYI DHDLVVEPRS FTSSTQASRP DVRSSSSSST ENVRERNSGS
101: TARSAPPPPP PTHTDSAVNP LRFDARTIHF SINAWILVVA GLGMLPILPK HLADRACKLS LLGTILSSGY SLYSTYGKPR AWNMPAIQAW LQSILATKDF
201: IHLMFSSMLF TSQLHLKIAA LPVFCWALDH VARFLRRNFA RSSFYRRYLE EPCLWVETNN TTLSLLSSNA EIALGFLLII SLFSWRRSIV QTFMYWQVLK
301: LMYHAPVTSS YHQSTWAKIG RIVNPYIHRY APFLQTPISA IQRWWFR
101: TARSAPPPPP PTHTDSAVNP LRFDARTIHF SINAWILVVA GLGMLPILPK HLADRACKLS LLGTILSSGY SLYSTYGKPR AWNMPAIQAW LQSILATKDF
201: IHLMFSSMLF TSQLHLKIAA LPVFCWALDH VARFLRRNFA RSSFYRRYLE EPCLWVETNN TTLSLLSSNA EIALGFLLII SLFSWRRSIV QTFMYWQVLK
301: LMYHAPVTSS YHQSTWAKIG RIVNPYIHRY APFLQTPISA IQRWWFR
001: MAEGGEDSQR LKKIAAAAFD YENDARWADY WSNILIPPHM ASRPEVVDHF KRKFYQRYID PDLVVEPMST SSSSSQSARP TATSASSTAS SNANEQVRSR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
101: NSGSVPRTSG PSATTGATPS SMRWDEQTIQ FSVNAWVFVI AVLAVLPLIP KNLSNRAYRL SFMGTACSSL YSLYSLYGRP RAWNMQGLQV YFQSIVAAKD
201: FIYFIYCLTF VTSHLCLKFA LIPILCRALE QVAKFLRRNF GRSTIYRKYL EDPCVWVESN TTTLNILSSQ AEIAIGFLLI ISLLSWQRNI IQTFMYWQLL
301: KLMYQAPVTA GYHQSTWSRI GRTVTPIIQR YAPFLNTPVS AVQRWWFR
Arabidopsis Description
AT3g02420/F16B3_5 [Source:UniProtKB/TrEMBL;Acc:Q9M898]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.