Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES19917 | Sorghum | cytosol | 97.3 | 97.3 |
| TraesCS1B01G403700.1 | Wheat | plasma membrane | 85.59 | 85.59 |
| TraesCS1A01G381200.1 | Wheat | plasma membrane | 85.59 | 85.59 |
| TraesCS1D01G389000.1 | Wheat | cytosol, plasma membrane, vacuole | 76.58 | 81.73 |
| HORVU1Hr1G084220.5 | Barley | cytosol | 72.07 | 71.43 |
| GSMUA_Achr8P03880_001 | Banana | cytosol, plasma membrane, vacuole | 72.07 | 68.97 |
| Solyc01g058280.2.1 | Tomato | cytosol | 59.46 | 64.08 |
| GSMUA_Achr3P26350_001 | Banana | cytosol | 69.37 | 63.64 |
| KRH02404 | Soybean | plasma membrane | 63.96 | 59.17 |
| KRH11903 | Soybean | plasma membrane | 63.06 | 58.33 |
| KRH36943 | Soybean | plasma membrane | 63.06 | 58.33 |
| CDY69277 | Canola | plasma membrane | 58.56 | 57.02 |
| AT5G49540.1 | Thale cress | plasma membrane | 57.66 | 56.14 |
| CDX86229 | Canola | plasma membrane | 57.66 | 55.65 |
| PGSC0003DMT400074727 | Potato | cytosol | 52.25 | 50.0 |
| Bra010030.1-P | Field mustard | plasma membrane | 44.14 | 42.24 |
| KRG89626 | Soybean | plasma membrane | 36.04 | 41.24 |
| KRH00023 | Soybean | cytosol, plasma membrane, vacuole | 34.23 | 40.43 |
Protein Annotations
| MapMan:35.2 | ProteinID:AQK91997.1 | EMBL:BT060966 | UniProt:C0HF60 | InterPro:Emc6 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0072546 | PFAM:PF07019 | PANTHER:PTHR20994 | PANTHER:PTHR20994:SF3 | InterPro:Rab5IP_fam | TMHMM:TMhelix |
| UniParc:UPI000182B222 | EnsemblPlantsGene:Zm00001d009496 | EnsemblPlants:Zm00001d009496_P001 | EnsemblPlants:Zm00001d009496_T001 | : | : |
Description
Rab5-interacting family protein
Coordinates
chr8:-:67222299..67226429
Molecular Weight (calculated)
12178.0 Da
IEP (calculated)
5.665
GRAVY (calculated)
0.914
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAGGVSTD DVPILQAENL TSNVKSVYYS RTFLSIIGGV VAGIWGFTGL MGFVFYFLIM MVASIGLLAK SKFSVQAYFD SWTRISIEGV FGGLMSFVLF
101: WTFAYDIVHI F
101: WTFAYDIVHI F
001: MGSSEKRSKD IMSDIPTFSA ENLQNNLKVI QNSRTFLSII AGVLAGIIGF NGLIGFVFYF VVMLITSVGL MAKAGFSADL YFDSWNRVLF DGFLGGLMSF
101: VLFWTFAYDL VHIF
101: VLFWTFAYDL VHIF
Arabidopsis Description
AT5g49540/K6M13_9 [Source:UniProtKB/TrEMBL;Acc:Q9AST5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.