Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69277 | Canola | plasma membrane | 94.74 | 94.74 |
| CDX86229 | Canola | plasma membrane | 92.11 | 91.3 |
| Bra010030.1-P | Field mustard | plasma membrane | 79.82 | 78.45 |
| Solyc01g058280.2.1 | Tomato | cytosol | 64.91 | 71.84 |
| KRH36943 | Soybean | plasma membrane | 67.54 | 64.17 |
| KRH02404 | Soybean | plasma membrane | 66.67 | 63.33 |
| KRH11903 | Soybean | plasma membrane | 66.67 | 63.33 |
| EES01277 | Sorghum | cytosol | 58.77 | 59.29 |
| GSMUA_Achr8P03880_001 | Banana | cytosol, plasma membrane, vacuole | 59.65 | 58.62 |
| EES19917 | Sorghum | cytosol | 57.02 | 58.56 |
| TraesCS1B01G403700.1 | Wheat | plasma membrane | 57.02 | 58.56 |
| TraesCS1A01G381200.1 | Wheat | plasma membrane | 57.02 | 58.56 |
| PGSC0003DMT400074727 | Potato | cytosol | 58.77 | 57.76 |
| Zm00001d009496_P001 | Maize | cytosol | 56.14 | 57.66 |
| GSMUA_Achr3P26350_001 | Banana | cytosol | 60.53 | 57.02 |
| TraesCS1D01G389000.1 | Wheat | cytosol, plasma membrane, vacuole | 50.88 | 55.77 |
| HORVU1Hr1G084220.5 | Barley | cytosol | 46.49 | 47.32 |
| KRG89626 | Soybean | plasma membrane | 39.47 | 46.39 |
| KRH00023 | Soybean | cytosol, plasma membrane, vacuole | 36.84 | 44.68 |
Protein Annotations
| MapMan:35.2 | EntrezGene:835015 | UniProt:A0A178UIC2 | ProteinID:AED95827.1 | EMBL:AF361850 | ArrayExpress:AT5G49540 |
| EnsemblPlantsGene:AT5G49540 | RefSeq:AT5G49540 | TAIR:AT5G49540 | RefSeq:AT5G49540-TAIR-G | EnsemblPlants:AT5G49540.1 | TAIR:AT5G49540.1 |
| EMBL:AY129476 | InterPro:Emc6 | GO:GO:0000045 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0034975 | GO:GO:0072546 |
| RefSeq:NP_568710.1 | ProteinID:OAO92411.1 | PFAM:PF07019 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR20994 | PANTHER:PTHR20994:SF3 |
| UniProt:Q9AST5 | InterPro:Rab5IP_fam | TMHMM:TMhelix | UniParc:UPI00000A12D2 | : | : |
Description
AT5g49540/K6M13_9 [Source:UniProtKB/TrEMBL;Acc:Q9AST5]
Coordinates
chr5:-:20104481..20106278
Molecular Weight (calculated)
12684.6 Da
IEP (calculated)
5.720
GRAVY (calculated)
0.718
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSEKRSKD IMSDIPTFSA ENLQNNLKVI QNSRTFLSII AGVLAGIIGF NGLIGFVFYF VVMLITSVGL MAKAGFSADL YFDSWNRVLF DGFLGGLMSF
101: VLFWTFAYDL VHIF
101: VLFWTFAYDL VHIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.