Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49540.1 | CDX70995 | AT5G22290.1 | 21798944 |
| AT5G49540.1 | CDX88803 | AT5G22290.1 | 21798944 |
| AT5G49540.1 | CDX92368 | AT5G22290.1 | 21798944 |
| AT5G49540.1 | CDY09128 | AT5G22290.1 | 21798944 |
| AT5G49540.1 | CDY35676 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY69277 | Canola | plasma membrane | 94.78 | 95.61 |
| AT5G49540.1 | Thale cress | plasma membrane | 91.3 | 92.11 |
| Bra010030.1-P | Field mustard | plasma membrane | 86.96 | 86.21 |
| Solyc01g058280.2.1 | Tomato | cytosol | 65.22 | 72.82 |
| KRH36943 | Soybean | plasma membrane | 68.7 | 65.83 |
| KRH02404 | Soybean | plasma membrane | 67.83 | 65.0 |
| KRH11903 | Soybean | plasma membrane | 67.83 | 65.0 |
| GSMUA_Achr8P03880_001 | Banana | cytosol, plasma membrane, vacuole | 60.87 | 60.34 |
| EES01277 | Sorghum | cytosol | 59.13 | 60.18 |
| GSMUA_Achr3P26350_001 | Banana | cytosol | 62.61 | 59.5 |
| EES19917 | Sorghum | cytosol | 57.39 | 59.46 |
| TraesCS1B01G403700.1 | Wheat | plasma membrane | 57.39 | 59.46 |
| TraesCS1A01G381200.1 | Wheat | plasma membrane | 57.39 | 59.46 |
| PGSC0003DMT400074727 | Potato | cytosol | 59.13 | 58.62 |
| Zm00001d009496_P001 | Maize | cytosol | 55.65 | 57.66 |
| TraesCS1D01G389000.1 | Wheat | cytosol, plasma membrane, vacuole | 51.3 | 56.73 |
| HORVU1Hr1G084220.5 | Barley | cytosol | 46.96 | 48.21 |
| KRG89626 | Soybean | plasma membrane | 40.0 | 47.42 |
| KRH00023 | Soybean | cytosol, plasma membrane, vacuole | 36.52 | 44.68 |
Protein Annotations
| EnsemblPlants:CDX86229 | EnsemblPlantsGene:GSBRNA2T00144324001 | GO:A0A078DD21 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0072546 | InterPro:Emc6 |
| InterPro:Rab5IP_fam | PANTHER:PTHR20994 | PANTHER:PTHR20994:SF3 | PFAM:PF07019 | ProteinID:CDX86229 | ProteinID:CDX86229.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDE2B5 | MapMan:35.2 | : | : |
Description
BnaA06g29460D
Coordinates
chrLK031845:+:468589..469914
Molecular Weight (calculated)
12806.7 Da
IEP (calculated)
7.526
GRAVY (calculated)
0.710
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSEKRSKD VVMSDIPTFS AENFQKNLKV IQNSRTFLSI IAGVLAGIIG FTGLTGFLFY FVVMLITSLG LMAKAGFSAD VYFDSWNRVL FDGFLGGLMS
101: FVLFWTFAYD LVHIF
101: FVLFWTFAYD LVHIF
001: MGSSEKRSKD IMSDIPTFSA ENLQNNLKVI QNSRTFLSII AGVLAGIIGF NGLIGFVFYF VVMLITSVGL MAKAGFSADL YFDSWNRVLF DGFLGGLMSF
101: VLFWTFAYDL VHIF
101: VLFWTFAYDL VHIF
Arabidopsis Description
AT5g49540/K6M13_9 [Source:UniProtKB/TrEMBL;Acc:Q9AST5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.