Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 4
- vacuole 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002403.1-P | |
| Bra006619.1-P | |
| Bra020182.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49540.1 | Bra002403.1-P | AT5G22290.1 | 21798944 |
| AT5G49540.1 | Bra006619.1-P | AT5G22290.1 | 21798944 |
| AT5G49540.1 | Bra020182.1-P | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86229 | Canola | plasma membrane | 86.21 | 86.96 |
| AT5G49540.1 | Thale cress | plasma membrane | 78.45 | 79.82 |
| Solyc01g058280.2.1 | Tomato | cytosol | 51.72 | 58.25 |
| KRH02404 | Soybean | plasma membrane | 55.17 | 53.33 |
| KRH36943 | Soybean | plasma membrane | 55.17 | 53.33 |
| KRH11903 | Soybean | plasma membrane | 54.31 | 52.5 |
| PGSC0003DMT400074727 | Potato | cytosol | 51.72 | 51.72 |
| TraesCS1D01G389000.1 | Wheat | cytosol, plasma membrane, vacuole | 44.83 | 50.0 |
| KRG89626 | Soybean | plasma membrane | 39.66 | 47.42 |
| GSMUA_Achr8P03880_001 | Banana | cytosol, plasma membrane, vacuole | 47.41 | 47.41 |
| GSMUA_Achr3P26350_001 | Banana | cytosol | 49.14 | 47.11 |
| EES01277 | Sorghum | cytosol | 45.69 | 46.9 |
| HORVU1Hr1G084220.5 | Barley | cytosol | 44.83 | 46.43 |
| EES19917 | Sorghum | cytosol | 43.97 | 45.95 |
| TraesCS1A01G381200.1 | Wheat | plasma membrane | 43.97 | 45.95 |
| TraesCS1B01G403700.1 | Wheat | plasma membrane | 43.97 | 45.95 |
| KRH00023 | Soybean | cytosol, plasma membrane, vacuole | 36.21 | 44.68 |
| Zm00001d009496_P001 | Maize | cytosol | 42.24 | 44.14 |
Protein Annotations
| MapMan:35.2 | EnsemblPlantsGene:Bra010030 | EnsemblPlants:Bra010030.1 | EnsemblPlants:Bra010030.1-P | InterPro:Emc6 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0072546 | UniProt:M4D0N1 | PFAM:PF07019 | PANTHER:PTHR20994 | PANTHER:PTHR20994:SF3 | InterPro:Rab5IP_fam |
| TMHMM:TMhelix | UniParc:UPI000253EEC8 | SEG:seg | : | : | : |
Description
AT5G49540 (E=2e-036) | unknown protein
Coordinates
chrA06:+:18720272..18720727
Molecular Weight (calculated)
12759.8 Da
IEP (calculated)
9.143
GRAVY (calculated)
0.682
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSEKRSKD VVMSDIPTFS AENFQKNLKV IQNSRTFLSI IAGVLAGIIG FTGLTGFLFY FVVMLITSLG LMAKAGFSAD VYFDSWNRVL FDGFLGGLMV
101: RYIFLFLATP PLSSCM
101: RYIFLFLATP PLSSCM
001: MGSSEKRSKD IMSDIPTFSA ENLQNNLKVI QNSRTFLSII AGVLAGIIGF NGLIGFVFYF VVMLITSVGL MAKAGFSADL YFDSWNRVLF DGFLGGLMSF
101: VLFWTFAYDL VHIF
101: VLFWTFAYDL VHIF
Arabidopsis Description
AT5g49540/K6M13_9 [Source:UniProtKB/TrEMBL;Acc:Q9AST5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.