Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G49540.1 | KRH22653 | AT5G22290.1 | 21798944 |
| AT5G49540.1 | KRH26664 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH00023 | Soybean | cytosol, plasma membrane, vacuole | 76.29 | 78.72 |
| KRH36943 | Soybean | plasma membrane | 78.35 | 63.33 |
| KRH11903 | Soybean | plasma membrane | 75.26 | 60.83 |
| KRH02404 | Soybean | plasma membrane | 64.95 | 52.5 |
| Solyc01g058280.2.1 | Tomato | cytosol | 45.36 | 42.72 |
| PGSC0003DMT400074727 | Potato | cytosol | 49.48 | 41.38 |
| CDX86229 | Canola | plasma membrane | 47.42 | 40.0 |
| Bra010030.1-P | Field mustard | plasma membrane | 47.42 | 39.66 |
| CDY69277 | Canola | plasma membrane | 46.39 | 39.47 |
| AT5G49540.1 | Thale cress | plasma membrane | 46.39 | 39.47 |
| GSMUA_Achr3P26350_001 | Banana | cytosol | 47.42 | 38.02 |
| GSMUA_Achr8P03880_001 | Banana | cytosol, plasma membrane, vacuole | 45.36 | 37.93 |
| TraesCS1D01G389000.1 | Wheat | cytosol, plasma membrane, vacuole | 40.21 | 37.5 |
| EES19917 | Sorghum | cytosol | 41.24 | 36.04 |
| Zm00001d009496_P001 | Maize | cytosol | 41.24 | 36.04 |
| HORVU1Hr1G084220.5 | Barley | cytosol | 41.24 | 35.71 |
| EES01277 | Sorghum | cytosol | 41.24 | 35.4 |
| TraesCS1A01G381200.1 | Wheat | plasma membrane | 40.21 | 35.14 |
| TraesCS1B01G403700.1 | Wheat | plasma membrane | 40.21 | 35.14 |
Protein Annotations
| MapMan:35.2 | EMBL:ACUP02012232 | InterPro:Emc6 | EnsemblPlantsGene:GLYMA_20G035600 | GO:GO:0000045 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0034975 |
| GO:GO:0072546 | UniProt:K7N180 | EnsemblPlants:KRG89626 | ProteinID:KRG89626 | ProteinID:KRG89626.1 | PFAM:PF07019 |
| PANTHER:PTHR20994 | PANTHER:PTHR20994:SF3 | InterPro:Rab5IP_fam | TMHMM:TMhelix | UniParc:UPI000295BEFB | : |
Description
hypothetical protein
Coordinates
chr20:-:4962770..4963363
Molecular Weight (calculated)
10902.7 Da
IEP (calculated)
9.510
GRAVY (calculated)
0.749
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MVVHSDLASL EKKSSNVVNE LLTFNAENMQ SHMKIIYYSR TFLSIIGGVV AGILGFADLK GFVFYLLLMS FTSLGLMAKA KFYRLELWLL ATLFSIL
001: MGSSEKRSKD IMSDIPTFSA ENLQNNLKVI QNSRTFLSII AGVLAGIIGF NGLIGFVFYF VVMLITSVGL MAKAGFSADL YFDSWNRVLF DGFLGGLMSF
101: VLFWTYP
101: VLFWTYP
Arabidopsis Description
AT5g49540/K6M13_9 [Source:UniProtKB/TrEMBL;Acc:Q9AST5]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.